Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq168 123 7e-23 seq182 102 2e-16 >seq168 Length=48346 Score = 123 bits (136), Expect = 7e-23 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||| || ||||||||||| ||||||||||| | ||| |||| ||||| | ||| || | Sbjct 36295 ACCTACTGCATCAATTTCATCAATGAAAATGATACAAGGAGCATTTTTCTTTGCATTTTC 36236 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA-- 289146 |||||| || | |||||| ||||| || | ||| ||| |||| ||||| || |||||| Sbjct 36235 AAATAAATCACGTACACGTGATGCACCGACACCGACAAACATCTCTACGAAGTCAGAACC 36176 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | |||| ||| ||||| || || || ||||| || || | || | | || Sbjct 36175 ACTGATA-GAGAA-GAATGGAACGCCAGCCTCACCTGCAACAGCACGTGCTAATAAAGTT 36118 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247 |||||||| || || ||||| ||||||| || |||||||| Sbjct 36117 TTACCTGTACCTGGAGGTCCAACTAATAGGACACCCTTTGG 36077 >seq182 Length=45529 Score = 102 bits (112), Expect = 2e-16 Identities = 133/180 (74%), Gaps = 12/180 (7%) Strand=Plus/Minus Query 251486 CACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAG 251545 ||||||| || ||||| ||||||||||||||||| |||||||||||||||||||| || | Sbjct 4884 CACCGTGAGAGATCATGCAATCACGCTCCATTTCTCCGAAACGAAGACCACCATCTCGCG 4825 Query 251546 CCCTACCCTCGGCAGGCTGACGAGT-GAGAT-TAACCATAGGACC----GATGGAGCGGC 251599 | |||||| | || || || || |||| | | | |||||| | | ||| | Sbjct 4824 ATCGACCCTCCACGGGTTGTCGGGTCAAGATCTGA--AGAGGACCGCGAGCTCGAGAGTG 4767 Query 251600 TATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 || ||| || || ||||| ||||||||||| |||||| ||| ||||| | | ||| Sbjct 4766 GATTTTG----TCGTTGACCATGTGCTTGAGACGTTGGTAGTATGTTGGACCAAGGTAGA 4711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471714920024965