Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_021856.1 Length=155631 Score E Sequences producing significant alignments: (Bits) Value seq19 901 0.0 seq1 172 5e-38 seq6 93.3 4e-14 seq8 86.0 6e-12 seq3 86.0 6e-12 >seq19 Length=184000 Score = 901 bits (998), Expect = 0.0 Identities = 942/1229 (77%), Gaps = 20/1229 (2%) Strand=Plus/Minus Query 12556 TATTTTTGAACTACCCCCACTTAACACCCTTACGGGTTGTTTGAAGTGAGGGATTCCTAC 12615 |||| |||||||| |||||||| | ||| ||| | |||| | |||||||||| Sbjct 177110 TATTATTGAACTATCCCCACTTT---CACTTC---GTT--TAGAAGAGGGGGATTCCTAA 177059 Query 12616 GAACTCCGTTCTATCGAACAGATATTTAGTAGGCTAACCCCGTAGCCCCTACGGTTAGAA 12675 | | |||||||||||| ||| | ||||||||||||| || || | ||||||||| Sbjct 177058 GTAAAGAGTTCTATCGAACTCTAATTGATTAGGCTAACCCCGCAGTCCTTGCGGTTAGAA 176999 Query 12676 GTCTTATCGCTTCATTTTTAATATTTTGTCCTGCGTTAATGTCTCTATCGTGATGTGTTC 12735 | |||||||||||||| || | ||| | ||||||||| || ||||| || ||||| | Sbjct 176998 GCCTTATCGCTTCATTCTTTAGATTGATACTTGCGTTAATATCCCTATCATGGTGTGTAC 176939 Query 12736 CGCAAGATGGGCAATCCCATTCACGAAGATTTAGATTCTTAACGTCTTTGTTTTTGTATC 12795 |||||| || |||||||||| ||| || || ||||| ||||||||||| |||| |||| Sbjct 176938 GGCAAGAAGGACAATCCCATTTACGTAGGTTCAGATTTTTAACGTCTTTATTTTGATATC 176879 Query 12796 CGCAACACGAACACAATTGA---GAACTTGCAAACGTTTTAGATACCGCAACAACTTGTT 12852 | ||||| ||||| ||||| ||| | ||| ||||| ||||| ||| ||||||| Sbjct 176878 CACAACAAGAACATAATTGGCTGGAA---GGAAATGTTTTCGATACGACAATGACTTGTT 176822 Query 12853 TGCCGTACCGTTTCGCTTTGTATTCAAGCATCGTTCTGAATTGATACCAAGATACTTCAC 12912 |||| |||| ||| ||||| ||||| | ||| |||| ||||| |||| ||||| |||| Sbjct 176821 TGCCATACCATTTTGCTTTATATTCCAACATGGTTCGAAATTGTGACCATGATACCTCAC 176762 Query 12913 TAATAGATTTGGCTAACTTATGATTCTTTAGCATATTACTTACTTGCAAATCTTCAATAC 12972 |||| | ||| ||||||||||||||||||| |||||| |||||||||||| || |||| Sbjct 176761 TAATTGCTTTTGCTAACTTATGATTCTTTAACATATTCAATACTTGCAAATCCTCTATAC 176702 Query 12973 CGATTACATCGTGGTTTTTGATGATTTCGGTAGAGATTTTTTGCAAGTAATCTGTTCTTG 13032 |||| |||||||||||||||||||| || || |||||||| | |||||||||| |||| | Sbjct 176701 CGATCACATCGTGGTTTTTGATGATGTCAGTTGAGATTTTGTCCAAGTAATCTTTTCTAG 176642 Query 13033 CATTGGTGATTTTTTCGTGAATACGTGCAACTTTAATTCGTTGCTTATTCCAATTAGAAC 13092 |||| || || | ||| || || | || ||||| | |||||| |||||||| |||| Sbjct 176641 CATTTGTCATGTATTCATGGATTCTAGCTACTTTTACTCGTTGTTTATTCCAGCGAGAAG 176582 Query 13093 CGCCTTTTGTGCGTCTGGAAAGAATACGTTGTGCGTTTGCTAATTTTTCTTCAAGTTTAC 13152 ||||| | | ||| ||||||| ||| ||||| ||||| || |||||||| | | | Sbjct 176581 ATCCTTTCATTCTTCTAGAAAGAACACGCTGTGCTTTTGCCAACTTTTCTTCTAATGATC 176522 Query 13153 GAAACCACTTTGGATTTTCGTATGGTGTTCCATCTGAAAGAGTTGCGAAGGTTTTTAATC 13212 |||| |||| ||||||| || | |||||||||||| | | ||||| ||||| || Sbjct 176521 GAAAAAACTTCGGATTTTTATAGGTTGTTCCATCTGATAATATGGCGAAATCTTTTAGTC 176462 Query 13213 CAACATCTATACCAATAGAAGAACCTGTTTTTTCTAATGGTTGCACCTCTGTTTCTAC-A 13271 | ||||| || ||||| ||||| |||||| | | |||||| |||||||| || | Sbjct 176461 CCACATCCATTCCAATGTAAGAATGTGTTTTCGGAAGTTCTTGCACTTCTGTTTCAACTA 176402 Query 13272 AGAATGGAAACAAAATATTTACCACTCGGATTACGTCTAACAGTAGCGTTAAGAATACGA 13331 | |||| | ||||| ||| | ||| || || ||||||||||| || || | |||||| Sbjct 176401 ACAATG-ACACAAAGTATCTGCCAGAAGGGTTCCGTCTAACAGTCGCATTTACAATACGT 176343 Query 13332 CCATGTACTTCACGACTTTTTGCAAAGCGAACAAGACCAAGTTTCGGCAATTTAATTTTG 13391 || ||||||||||||||||| ||||| |||||||| || ||||| ||||| || |||||| Sbjct 176342 CCTTGTACTTCACGACTTTTGGCAAATCGAACAAGGCCTAGTTTGGGCAACTTTATTTTG 176283 Query 13392 TTGCCTACAATGGCAATGTTTCCATTCGTGTGTTTTGTTGTATAAGATTGAACCTTATTC 13451 || ||| ||| |||||| ||| |||| || |||||||| ||||||||||| || |||||| Sbjct 176282 TTCCCTTCAACGGCAATATTTTCATTTGTTTGTTTTGTGGTATAAGATTGTACGTTATTC 176223 Query 13452 TTTTTGGACTTGAAGCGAGGTGCATCGTTTTGCTTCTTAAAGAAGCGAGAATAAGCATCA 13511 |||||||| ||||| || || ||| ||||| || || || || || | ||| ||||| Sbjct 176222 TTTTTGGATTTGAAACGCGGGGCACTATTTTGTTTTTTGAAAAATCGTGTATATGCATCC 176163 Query 13512 GCAAGGTTTTTGAGTGAAGATTGAATCGCAATGCTGTCCACCTCTTTTAACCAAACTAAT 13571 |||||||| | || || ||||||||||| || ||||| ||||||| |||||| || Sbjct 176162 GCAAGGTTGCGAACAGACGACTGAATCGCAATACTATCCACTTCTTTTAGCCAAACAAAC 176103 Query 13572 TCTTTCTTTAATTGG--GTTAATTGAGAAGAACACGAATTGTAAGTCAAACCTTTTCCTG 13629 |||||||| | ||| | | || | ||| || | | || |||||||||||||||| Sbjct 176102 TCTTTCTTCA--TGGCAGGAAGTTTGGCAGAGCATGTACCATATGTCAAACCTTTTCCTG 176045 Query 13630 TTGCCTTATAAGTATCGTTCCATTTTGCGAGGAAATGATTGAATACAAAACGAGAACAAC 13689 || | || || | || | |||| | ||||||||||||||||||||||||||||| | Sbjct 176044 TTTCTTTGTATGCATTATCCCATAGAGATAGGAAATGATTGAATACAAAACGAGAACAGC 175985 Query 13690 CGATTGTTTTAGCAATCAGTATTTCTTGTTCTTTGCTTGGATAGATACGAAATTTATATG 13749 | || |||||| ||| || | ||||| ||| |||||||||||||||||||||||| Sbjct 175984 CAATCGTTTTATTAATTAGGGTCGCTTGTGCTTGATTTGGATAGATACGAAATTTATATG 175925 Query 13750 CTTTATTGACCAACATGACTTTCACCTCC 13778 || |||||| || ||| ||||||| || Sbjct 175924 CTGTATTGATCATCATTCGTTTCACCCCC 175896 Score = 843 bits (934), Expect = 0.0 Identities = 924/1223 (76%), Gaps = 18/1223 (1%) Strand=Plus/Minus Query 12561 TTGAACTACCCCCACTTAACACCCTTACGGGTTGTTTGAAGTGAGGGATTCCTACGAACT 12620 ||||||||||||||||| | ||| ||| | |||| | |||||||||| | | Sbjct 136019 TTGAACTACCCCCACTTT---CACTTC---GTT--TAGAAGAGGGGGATTCCTAAGTAAA 135968 Query 12621 CCGTTCTATCGAACAGATATTTAGTAGGCTAACCCCGTAGCCCCTACGGTTAGAAGTCTT 12680 |||||||||||| ||| | ||||||||||||| || || | |||||||||| ||| Sbjct 135967 GAGTTCTATCGAACTCTAATTGATTAGGCTAACCCCGCAGTCCTTGCGGTTAGAAGCCTT 135908 Query 12681 ATCGCTTCATTTTTAATATTTTGTCCTGCGTTAATGTCTCTATCGTGATGTGTTCCGCAA 12740 ||||||||||| || | ||| | ||||||||| || ||||| || ||||| | |||| Sbjct 135907 ATCGCTTCATTCTTTAGATTGATACTTGCGTTAATATCCCTATCATGGTGTGTACGGCAA 135848 Query 12741 GATGGGCAATCCCATTCACGAAGATTTAGATTCTTAACGTCTTTGTTTTTGTATCCGCAA 12800 || || |||||||||| ||| || || ||||| ||||||||||| |||| ||||| ||| Sbjct 135847 GAAGGACAATCCCATTTACGTAGGTTCAGATTTTTAACGTCTTTATTTTGATATCCACAA 135788 Query 12801 CACGAACACAATTGA---GAACTTGCAAACGTTTTAGATACCGCAACAACTTGTTTGCCG 12857 || ||||| ||||| ||| | ||| ||||| ||||| ||| ||||||||||| Sbjct 135787 CAAGAACATAATTGGCTGGAA---GGAAATGTTTTCGATACGACAATGACTTGTTTGCCA 135731 Query 12858 TACCGTTTCGCTTTGTATTCAAGCATCGTTCTGAATTGATACCAAGATACTTCACTAATA 12917 |||| ||| ||||| ||||| | ||| |||| ||||| |||| ||||| |||||||| Sbjct 135730 TACCATTTTGCTTTATATTCCAACATGGTTCGAAATTGTGACCATGATACCTCACTAATT 135671 Query 12918 GATTTGGCTAACTTATGATTCTTTAGCATATTACTTACTTGCAAATCTTCAATACCGATT 12977 | ||| ||||||||||||||||||| |||||| |||||||||||| || |||||||| Sbjct 135670 GCTTTTGCTAACTTATGATTCTTTAACATATTCAATACTTGCAAATCCTCTATACCGATC 135611 Query 12978 ACATCGTGGTTTTTGATGATTTCGGTAGAGATTTTTTGCAAGTAATCTGTTCTTGCATTG 13037 |||||||||||||||||||| | || |||||||| | |||||||||| |||| ||||| Sbjct 135610 ACATCGTGGTTTTTGATGATGCCAGTTGAGATTTTATCCAAGTAATCTTTTCTAGCATTT 135551 Query 13038 GTGATTTTTTCGTGAATACGTGCAACTTTAATTCGTTGCTTATTCCAATTAGAACCGCCT 13097 | || | ||| ||||| | || || || | |||||| |||||||| |||| ||| Sbjct 135550 GATATGTATTCATGAATTCTAGCTACCTTGACTCGTTGTTTATTCCAGCGAGAAGATCCT 135491 Query 13098 TTTGTGCGTCTGGAAAGAATACGTTGTGCGTTTGCTAATTTTTCTTCAAGTTTACGAAAC 13157 || | | ||| ||||||| | | ||||| || || || || ||||| | | || || Sbjct 135490 TTCATTCTTCTAGAAAGAACAAGCTGTGCTTTCGCCAACTTATCTTCTAATGATCGGAAA 135431 Query 13158 CACTTTGGATTTTCGTATGGTGTTCCATCTGAAAGAGTTGCGAAGGTTTTTAATCCAACA 13217 |||| |||||||| | |||||||||||||| | | | ||||| ||||| ||| ||| Sbjct 135430 AACTTCGGATTTTCACAGGGTGTTCCATCTGACAAAATGGCGAAATCTTTTAGTCCTACA 135371 Query 13218 TCTATACCAATAGAAGAACCTGTTTTTTCTAATGGTTGCACCTCTGTTTCTACAAGAATG 13277 ||||| ||||| ||||| |||||| | | ||| || |||||||| || | | Sbjct 135370 TCTATCCCAATGTAAGAATGTGTTTTCGGAAGTTCTTGTACTTCTGTTTCAACTAATAGT 135311 Query 13278 GAAACAAAATATTTACCACTCGGATTACGTCTAACAGTAGCGTTAAGAATACGACCATGT 13337 || ||||||||| |||| || || ||||||||||| || || | |||||| || | | Sbjct 135310 GACACAAAATATCTACCTGAAGGGTTTCGTCTAACAGTCGCATTTACAATACGTCCCTCT 135251 Query 13338 ACTTCACGACTTTTTGCAAAGCGAACAAGACCAAGTTTCGGCAATTTAATTTTGTTGCCT 13397 |||||||||||||| ||||| |||||||| || ||||| ||||| || |||||||| ||| Sbjct 135250 ACTTCACGACTTTTGGCAAATCGAACAAGGCCTAGTTTGGGCAACTTTATTTTGTTCCCT 135191 Query 13398 ACAATGGCAATGTTTCCATTCGTGTGTTTTGTTGTATAAGATTGAACCTTATTCTTTTTG 13457 ||| |||||| ||| |||| || |||||||| ||||||||||| | |||||||||||| Sbjct 135190 TCAACGGCAATATTTTCATTTGTTTGTTTTGTGGTATAAGATTGTATGTTATTCTTTTTG 135131 Query 13458 GACTTGAAGCGAGGTGCATCGTTTTGCTTCTTAAAGAAGCGAGAATAAGCATCAGCAAGG 13517 || ||||| || || ||| ||||| || || || || || | ||| ||||| |||||| Sbjct 135130 GATTTGAAACGCGGGGCACTATTTTGTTTTTTGAAAAATCGTGTATACGCATCCGCAAGG 135071 Query 13518 TTTTTGAGTGAAGATTGAATCGCAATGCTGTCCACCTCTTTTAACCAAACTAATTCTTTC 13577 || | || || ||||||||||| || ||||| ||||| | |||||| || |||||| Sbjct 135070 TTGCGAACAGACGACTGAATCGCAATACTATCCACTTCTTTGAGCCAAACAAACTCTTTC 135011 Query 13578 TTTAATTGG--GTTAATTGAGAAGAACACGAATTGTAAGTCAAACCTTTTCCTGTTGCCT 13635 || | ||| | | || | ||| || | | || || |||||||| || || | | Sbjct 135010 TTCA--TGGCAGGAAGTTTGGCAGAGCATGTACCATATGTTAAACCTTTCCCCGTCTCTT 134953 Query 13636 TATAAGTATCGTTCCATTTTGCGAGGAAATGATTGAATACAAAACGAGAACAACCGATTG 13695 | || | | | |||| | |||||||||||||||||||| ||||||||||| || | Sbjct 134952 TGTATGCGTGATCCCATAGGGATAGGAAATGATTGAATACAAAGCGAGAACAACCTATCG 134893 Query 13696 TTTTAGCAATCAGTATTTCTTGTTCTTTGCTTGGATAGATACGAAATTTATATGCTTTAT 13755 |||| ||| || ||| ||||| ||| |||||||||||||||||||||| ||||||| Sbjct 134892 TTTTGTTAATTAGAATTGCTTGTGCTTGATTTGGATAGATACGAAATTTATAGGCTTTAT 134833 Query 13756 TGACCAACATGACTTTCACCTCC 13778 | | | ||| ||||||||| Sbjct 134832 TAATTATCATTTGATTCACCTCC 134810 Score = 116 bits (128), Expect = 4e-21 Identities = 141/191 (74%), Gaps = 7/191 (4%) Strand=Plus/Minus Query 12599 AAGTGAGGGATTCCTACGAACTCCGTTCTATCGAACAGATATTTAGTAGGCTAACCCCGT 12658 ||| |||| ||||||| | | |||| || ||| | ||||| ||||||| ||| | Sbjct 175202 AAGGGAGGAATTCCTAAGTAAAGAGTTCGATAGAAATCAAATTTATTAGGCTATCCCTGC 175143 Query 12659 AGCCCCTACGGTTAGAAGTCTTATCGCTTCATTTTTAATATTTTGTCCTGCGTTAATGTC 12718 || || |||||||||| | |||||||| |||| || | ||| | || ||||| | Sbjct 175142 AGTCCTTACGGTTAGAGGCCTTATCGCATCATCATTTAGATTGCTACTTG--TTAATATT 175085 Query 12719 TCTATCGTGATGTGTTCCGCAAGATGGGCAATCCCATTCACGAAGATTTAGATTCTTAAC 12778 ||||| ||||||| || ||||| ||||| ||||||| ||||| ||||| ||||| Sbjct 175084 CCTATCATGATGTGCACCCCAAGAAGGGCAGTCCCATT-----AGATTCAGATTTTTAAC 175030 Query 12779 GTCTTTGTTTT 12789 ||||||||||| Sbjct 175029 GTCTTTGTTTT 175019 Score = 98.7 bits (108), Expect = 1e-15 Identities = 85/103 (83%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 14003 GCTATCCCTTGTCCGAAGGCGATTCATCTCCCACCTACTCACTGGGCTACG-CCCTTCAC 14061 || ||||||||| ||||| | ||||||||||||||||||||||| ||| | |||||||| Sbjct 134718 GCCATCCCTTGTTCGAAGCCAATTCATCTCCCACCTACTCACTGAGCTGTGACCCTTCAC 134659 Query 14062 GTTCCTTGAGGTGGGAGTATTCTCGCCTATTTTTGATaaaaaa 14104 | ||||||||| ||||| |||| | ||| |||||||||| Sbjct 134658 GCTCCTTGAGGAAGGAGTCTTCTTGGCTA-AAATGATAAAAAA 134617 >seq1 Length=1156483 Score = 172 bits (190), Expect = 5e-38 Identities = 97/98 (99%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 96642 TTACAGCCCTTTCCGAACGGGAAAGCCCATCGCCTTTAGGCATGGGATGAAAGTGAGGTT 96701 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 850383 TTACAGCCCTTTCCGAACGGGAAAGTCCATCGCCTTTAGGCATGGGATGAAAGTGAGGTT 850442 Query 96702 GGATACGGAGTACCACTAAAAATCGCTAAGTTTGTGGT 96739 |||||||||||||||||||||||||||||||||||||| Sbjct 850443 GGATACGGAGTACCACTAAAAATCGCTAAGTTTGTGGT 850480 >seq6 Length=382643 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 48082 AACTTGAAAGCTAACCCGGGACTAAAAGTTATTGCAGTGGACCCTAATGTTATTCCATTA 48141 ||||| | |||||| || | ||| | |||||||| || || | ||| ||||||||| Sbjct 339028 AACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTTGATCCAAGTGTCATTCCATTA 339087 Query 48142 GGATCAAAAGTTTATGTTGAGGGATACGGAACTGCCGTAGCTGCCGATACGGGTGGAGCT 48201 || |||||||| | ||||| || |||||| || | |||| ||||| ||||||||| Sbjct 339088 GGTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATCGCTGGTGATACTGGTGGAGCT 339147 Query 48202 ATTAAAGGGAACCGTATTGATGTGTTCATCCCTAGCCAGA-GTGCAGCAGAAAACTTTGG 48260 |||||||| || || || || || || || || | | || || || | || || Sbjct 339148 ATTAAAGGTAATAAAATCGACGTTTTAATGCC-AGATAAAGGTTCATCAAGTAGCTGGGG 339206 Query 48261 GCGTAAAACAGTACAAGTAACGGTTTTAAATTA 48293 ||||||||||| ||| | || ||||| || Sbjct 339207 ACGTAAAACAGTTACAGTTAAAGTATTAAACTA 339239 Score = 89.7 bits (98), Expect = 5e-13 Identities = 92/119 (77%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 48107 AAGTTA-TTGCAGTGGACCCTAATGTTATTCCATTAGGATCAAAAGTTTATGTTGAGGGA 48165 |||||| ||||||| || ||||| |||||| | ||||| | ||||||| ||||| ||| Sbjct 157234 AAGTTAATTGCAGTTGATCCTAAAGTTATTAAACTAGGAACGAAAGTTTGGGTTGAAGGA 157175 Query 48166 TACGGAACTGCCGTAGCTGCCGATACGGGTGGAGCTATTAAAGGGAACCGTATTGATGT 48224 ||||| ||| | |||| ||||| ||||| ||||||||||| || |||||||| Sbjct 157174 TACGGTGATGCAATTGCTGGAGATACAGGTGGGGCTATTAAAGGCAATAAAATTGATGT 157116 >seq8 Length=318055 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 48106 AAAGTTATTGCAGTGGACCCTAATGTTATTCCATTAGGATCAAAAGTTTATGTTGAGGGA 48165 ||| | || || || ||||| || || || ||||||||||| ||||| | || || || Sbjct 28436 AAAATGATCGCTGTTGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGT 28377 Query 48166 TACGGAACTGCCGTAGCTGCCGATACGGGTGGAGCTATTAAAGGGAACCGTATTGAT 48222 |||||| || | |||| ||||| ||||| || |||||||| |||||||||||| Sbjct 28376 TACGGAGAAGCTATCGCTGGAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGAT 28320 >seq3 Length=500241 Score = 86.0 bits (94), Expect = 6e-12 Identities = 81/102 (79%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 96641 GTTACAGCCCTTTCCGAACGGGAAAGCCCATCGCCTTTAGGCATGGGATGAAAGTGAGGT 96700 |||| ||| || | |||| |||||| ||||||||||||||||||| ||||| ||||| Sbjct 434135 GTTATAGCTTTTCCTGAACAAGAAAGCT-ATCGCCTTTAGGCATGGGAGGAAAGGGAGGT 434193 Query 96701 TGGATACGGAGTACCACTAAAAATCGCTAAGTTTGTGGTGCT 96742 | |||||||| | | |||||||||| | ||| ||||| || Sbjct 434194 TTGATACGGATTGTCCCTAAAAATCGTAACGTTCGTGGTACT 434235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497857312280200