Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq472 214 2e-49 seq14 102 1e-15 seq29 100 3e-15 seq350 96.9 4e-14 seq41 87.8 2e-11 >seq472 Length=14052 Score = 214 bits (236), Expect = 2e-49 Identities = 344/491 (70%), Gaps = 19/491 (4%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||||||||| |||| ||| |||| ||||||||||| || | |||||| || Sbjct 10619 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGAG 10678 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||| ||||| || | ||||| ||||| ||||| | ||||| | || ||| Sbjct 10679 TAGCCGTTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 10738 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||||||||||||| || ||||||||||| ||||| || Sbjct 10739 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTCGTAAATGCCTTCA 10798 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||| || ||||||| || || || || ||||| |||||||| | ||| ||| Sbjct 10799 ATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCG 10858 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA-GGT 1630364 |||||||||||||| |||| || ||| || | || ||||| || ||| | Sbjct 10859 GCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATAAGGTTGTACGAC 10918 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 || || |||||| || | |||| | || | | ||||| |||||| Sbjct 10919 TGCAAG-ACGCGC------------TCAATGTCGTGA---CCGTGGATGCCGACGGCGAC 10962 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCG-CGCACCTTGGTCAGGTAGG 1630483 ||||||||||||| || || || ||| |||| |||| || | | || ||||| Sbjct 10963 ACGCATGAGCATGTGTTGCGGGCGTTCGGCGACCTTGCCGTCGATGCGAAG-CAAGTAGG 11021 Query 1630484 ACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGG 1630543 | || | || ||| |||||||||| || | ||||||||||||| | || || Sbjct 11022 AGCGTTCGAGCGTTTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGTAGATGACGG 11081 Query 1630544 CGGCGTCGAGG 1630554 || || |||| Sbjct 11082 CGCTGTTGAGG 11092 Score = 116 bits (128), Expect = 5e-20 Identities = 290/449 (65%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 1628152 GGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTC 1628211 |||| ||| ||| || |||||||||||||||||| | |||| | |||| || || ||| Sbjct 10169 GGCGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGACGACTTGATCGTGCCAAGATTC 10228 Query 1628212 TGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCG 1628271 | ||||| | || ||| ||||||| |||| |||||| | || ||| || ||| Sbjct 10229 TTTTGGTTCGATTTCTTGTTCGCGGCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCG 10288 Query 1628272 ATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGG 1628331 | ||| || | | || || |||| | || ||||||| | || |||||| Sbjct 10289 ACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCGCGGGGATCGTTTTCTTGGCGCGG 10348 Query 1628332 CCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGG 1628391 |||| || || |||| ||| ||||| ||| Sbjct 10349 CCCTCCTTTTCGTATTTCTCGAACAAGGCGCGGAACTCCTCGCCATAGACTTCGTGTAGG 10408 Query 1628392 CCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATA 1628451 ||||| || |||| || || ||||| | ||| ||||| ||| | | | || ||| Sbjct 10409 CCGGGGGCTTCGGCGGGGCAGAAGAGAGGCCAATCGCCGGCGGCCTCGACACGCTCCATG 10468 Query 1628452 AAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCG 1628511 || || || |||| || || | ||||| || || || || |||||||||||| Sbjct 10469 AAAAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCG 10528 Query 1628512 TGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAG 1628571 |||||||| ||||| || | |||| | |||||||||||||||||| |||||| Sbjct 10529 TGGTTCTTGCGAAGGTCCAGGAATTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATC 10588 Query 1628572 GCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 || ||||| || |||||| ||| || Sbjct 10589 GCGAAGGCTCCGGGACGCTTGTTGCCACC 10617 Score = 102 bits (112), Expect = 1e-15 Identities = 171/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 1626982 TGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCG 1627041 ||||||||||| |||| ||| || | |||||| || ||||||| ||||||||||| Sbjct 9019 TGGTCGACGGTGAACTTGATCGCACCAACGGCGGCCCGCGTGCGCAAGTAGTACATGCCC 9078 Query 1627042 GTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCG 1627101 ||||| || || | ||| ||||| |||||||||||||| || | ||| | | Sbjct 9079 GTCTTCAGTCCTCTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATCGTTGGG 9138 Query 1627102 -TCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGC 1627160 ||| | ||| | ||| ||||| || |||||| | ||| | || ||||| | Sbjct 9139 CTCGAC-AAGTGGATGTTAAGCGATTGCGACTGGTCAATGAAGGCACCTCGGTCGGCGGA 9197 Query 1627161 CATGTCGATGGTGACCCGGTTG-GGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGT 1627219 || |||||| | | | ||| | | |||||| ||||||||| ||||||||||||| | Sbjct 9198 CAAGTCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAGAT 9256 Query 1627220 CG 1627221 || Sbjct 9257 CG 9258 >seq14 Length=201404 Score = 102 bits (112), Expect = 1e-15 Identities = 126/172 (73%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 869704 GAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGAC 869763 ||| || || ||| ||||||| |||||||||||| |||||||||||| || ||||| Sbjct 61160 GAATCGCTCGACCAAGTTCTCGTTGACGATGCCGTCGGAGGCGGCGAAAAAGGCGAGGAC 61101 Query 869764 GTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGGACGGTGTCGGC 869820 |||| ||| |||| |||||||||| ||||| |||||| | |||| Sbjct 61100 GTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAGCTTGTTGTCCCAGTCGTGCATGTCCTT 61041 Query 869821 GCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 | ||||||| ||| ||||||||||| | || ||||| ||||| |||||| Sbjct 61040 GGACAGGTCCATCTCTTCGGCGGTCCAAAAAGATGCCTCAGCCTTCTTGTAC 60989 >seq29 Length=144657 Score = 100 bits (110), Expect = 3e-15 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GTG 19111 ||||| || ||||| |||||||| ||||||| ||| || ||||| ||||| ||| Sbjct 25953 ATCGGTGGTACGGTCACGTGCGTCATCCGCAACGCTCCGTTCGGTCTCGGAGAGCCCGTG 26012 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 || |||||| | || ||| | ||||||||||||||||||||||| || |||||||| Sbjct 26013 -TTCGACAAGCTGGAAGCCCTCTTGGCCCACGCCATGCTGTCGATCCCCGCAACCAAGGG 26071 Query 19172 ATTCGAGATTGG 19183 || |||||||| Sbjct 26072 CTTTGAGATTGG 26083 >seq350 Length=21228 Score = 96.9 bits (106), Expect = 4e-14 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | ||||||||||||||||| || Sbjct 1402 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGA 1343 Query 1254403 ---TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 ||| ||| | |||| || ||| || || || ||| || |||||| || | Sbjct 1342 TAGTCGCCTTGTGGTTGT---AGGTCGCGAGCTTGCACGCTTCGATGGTGATGCGCTCAA 1286 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 || |||||||| |||||||| | || | ||||| |||||| ||||| || ||||| Sbjct 1285 AGATATCGTTGACGAACGAGTTGAGGATCAGCATCGCCTTGTTCGAGATACCGGTGTCGG 1226 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| || ||||| | ||||||| Sbjct 1225 GGTGGACTTGCTTCAACACCTTG 1203 >seq41 Length=116353 Score = 87.8 bits (96), Expect = 2e-11 Identities = 142/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || ||| || | | ||||| ||| || | |||||||||||||||| || Sbjct 37325 GCTTGGACAATTCTCCAGGGAGGATCAAGCGAACCGAAGTCTGGATCTCGCGCGACGTGA 37384 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 |||| ||| | |||| | ||||| || | |||||| | |||||| || | Sbjct 37385 TCGTCGCCTTGTGGTTGT---ATTGCGCGAGCTTGGACGCCTCGAGGGTGATGCGCTCAA 37441 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || ||||| |||||| ||||| ||| ||||| Sbjct 37442 AGATGTCGTTGACGAACGAGTTGAGGATTAGCATCGCCTTGTTCGAGATACCCGTGTCGG 37501 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| || || | | ||| ||| Sbjct 37502 GGTGAACTTGTCTCAACACTTTG 37524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106692357801065