Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_022094.1 Length=14319 Score E Sequences producing significant alignments: (Bits) Value seq5 174 1e-39 >seq5 Length=406804 Score = 174 bits (192), Expect = 1e-39 Identities = 232/318 (73%), Gaps = 13/318 (4%) Strand=Plus/Plus Query 10414 AGTGGTATCAATATTGTGTAGAAAACGGTATTGAGGTACTAATCTATGAAACAACTCGTA 10473 |||||||||| || ||| | || || || ||||| ||| |||| |||||||||| |||| Sbjct 271412 AGTGGTATCAGTACTGTATCGACAATGGAATTGAAGTATTAATTTATGAAACAATCCGTA 271471 Query 10474 CCATCGAACAACAACGTGAGAACGTACGTAAAGGCGCGTCACAAACTATGAAGTCATACC 10533 | |||| ||||||||||| | || |||||||| || |||||||| ||| ||||| | Sbjct 271472 CGGTCGAGCAACAACGTGAATATGTTCGTAAAGGAGCATCACAAACGATGCGCTCATATC 271531 Query 10534 ACTTAGTAGGACAAGCTTTGGATTTCGTACCA--GCAAGAGAA-GCCGAGGTATATTGGG 10590 ||||||||||||| || || ||||| || ||| || ||| | | | ||||| Sbjct 271532 ACTTAGTAGGACAGGCATTAGATTTTGTTCCAATTCAGTCGAATGGTACAGAAGATTGGA 271591 Query 10591 ATGG--ATACTATAGAAAC---GACATTCAAAAGGCTATCGGGTATGCGAAGTCTATCGG 10645 |||| ||| || |||| | | || ||| || || | ||||| || || || Sbjct 271592 ATGGCTATAATAAAGAACCGTGGGCA-TCA----GCAATTCGTTATGCTAAACAAATTGG 271646 Query 10646 TTTTGAATGGGGTGGTGACTGGAAAGGGTTTGTTGATAGTCCACRCTTACARTACAACTA 10705 ||||||||||| |||||||||||||| ||||| ||||| || | || || || ||||| Sbjct 271647 CTTTGAATGGGGCGGTGACTGGAAAGGATTTGTGGATAGCCCGCATTTGCAATATAACTA 271706 Query 10706 TAACGGTTACGGGACGGA 10723 || || || || ||||| Sbjct 271707 CAAAGGATATGGAACGGA 271724 Lambda K H 0.637 0.409 0.917 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 45699522676870