Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq2489 87.8 3e-12 seq69 86.0 1e-11 >seq2489 Length=589 Score = 87.8 bits (96), Expect = 3e-12 Identities = 79/96 (82%), Gaps = 4/96 (4%) Strand=Plus/Plus Query 122737 CGCGGGTTCGATTCCCGCTGGGGTCGCCAT--AG-GACGTTAGCTCAGTTGGTTAGAGCA 122793 ||| ||||||| ||| ||| | ||||| || | | |||||||||||||| |||||| Sbjct 482 CGCTGGTTCGAATCCAGCTAGCCCAGCCATTAAGAGCCATTAGCTCAGTTGGT-AGAGCA 540 Query 122794 TCTGACTTTTAATCAGAGGGTCCTGGGTTCGAGTCC 122829 |||||||||||||||||||||| ||||||||||| Sbjct 541 TCTGACTTTTAATCAGAGGGTCGAAGGTTCGAGTCC 576 >seq69 Length=88854 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/97 (81%), Gaps = 5/97 (5%) Strand=Plus/Minus Query 122737 CGCGGGTTCGATTCCCGCTGGGGTCGCCAT--AGGA--CGTTAGCTCAGTTGGTTAGAGC 122792 ||| ||||||| ||| ||| | ||||| | || | |||||||||||||| ||||| Sbjct 641 CGCTGGTTCGAATCCAGCTAGCCCAGCCATTTACGAGCCATTAGCTCAGTTGGT-AGAGC 583 Query 122793 ATCTGACTTTTAATCAGAGGGTCCTGGGTTCGAGTCC 122829 ||||||||||||||||||||||| ||||||||||| Sbjct 582 ATCTGACTTTTAATCAGAGGGTCGAAGGTTCGAGTCC 546 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/97 (81%), Gaps = 5/97 (5%) Strand=Plus/Minus Query 122737 CGCGGGTTCGATTCCCGCTGGGGTCGCCAT--AGGA--CGTTAGCTCAGTTGGTTAGAGC 122792 ||| ||||||| ||| ||| | ||||| | || | |||||||||||||| ||||| Sbjct 88055 CGCTGGTTCGAATCCAGCTAGCCCAGCCATTTACGAGCCATTAGCTCAGTTGGT-AGAGC 87997 Query 122793 ATCTGACTTTTAATCAGAGGGTCCTGGGTTCGAGTCC 122829 ||||||||||||||||||||||| ||||||||||| Sbjct 87996 ATCTGACTTTTAATCAGAGGGTCGAAGGTTCGAGTCC 87960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825860586037800