Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_022763.1 Length=164297 Score E Sequences producing significant alignments: (Bits) Value seq8 183 3e-41 seq7 158 1e-33 seq6 141 1e-28 seq361 123 3e-23 seq16 98.7 1e-15 >seq8 Length=318055 Score = 183 bits (202), Expect = 3e-41 Identities = 177/225 (79%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 47378 ACAGTTGTTGCTACTGCATATACAGCTTCACCAGAT-GAGAATGGCGGTACATATGGCGG 47436 |||||||| ||||| |||||||||||| |||| || || || || || ||||||||||| Sbjct 28544 ACAGTTGTAGCTACAGCATATACAGCT-CACCCGAGCGAAAACGGTGGCACATATGGCGG 28486 Query 47437 AGTAGTTAAAACAGCAATGGGTCACAACCTATCAGCAAATCCTAGTATGAAAATGGTTGC 47496 || ||| ||||||||||| | || | || ||||| | |||||||||| | || Sbjct 28485 CCGTGTATTAACTGCAATGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGC 28426 Query 47497 AGTTGACCCGAACGTAATCCCACTTGGGTCTCGTATTTATGTAGAAGGTTACGGAGAAGC 47556 ||||||||||| ||||||||| | || ||| | | |||||||||||||||||||| Sbjct 28425 TGTTGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGC 28366 Query 47557 AATCGCTGGTGATACTGGCGGCGCAATCAAAGGTAATCGTATCGA 47601 |||||||| |||||||| || ||||| |||||||| ||||| || Sbjct 28365 TATCGCTGGAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGA 28321 >seq7 Length=350003 Score = 158 bits (174), Expect = 1e-33 Identities = 210/290 (72%), Gaps = 9/290 (3%) Strand=Plus/Plus Query 47378 ACAGTTGTTGCTACTGCATATACAGCTTCACCAGATGAGAATGGCGGTACATATGGCGGA 47437 || || || || || || ||||| ||| ||| ||| ||||| ||||||||| ||| Sbjct 228992 ACGGTAGTAGCGACAGCGTATACTGCTGATCCAAGTGAAAATGG---TACATATGGTGGA 229048 Query 47438 GTAGTTAAAACAGCAATGGGTCACAACCTATCAGCAAATCCTAGTATGAAAATGGTTGCA 47497 ||| ||| || ||||| || | || | |||||||| | ||||| ||| | ||| Sbjct 229049 CGCGTTTTAACTGCGATGGGGCATGATTTAACGGCAAATCCGAATATGAGAATTATCGCA 229108 Query 47498 GTTGACCCGAACGTAATCCCACTTGGGTCTCGTATTTATGTAGAAGGTTACGGAGAAGCA 47557 ||||||||||| ||||||||| | || ||| | | |||||||| || |||||||| Sbjct 229109 GTTGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAGAAGCG 229168 Query 47558 ATCGCTGGTGATACTGGCGGCGCAATCAAAGGTAATCGTATCGACGTATTGATG---CCA 47614 ||||||||||||||||| | ||||| |||||||||||||| || || || ||| || Sbjct 229169 ATCGCTGGTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGTTTTAATGGGTTCA 229228 Query 47615 AACAAAAAGGTTTCTAGCGACTGGGGAAGAAAAACAGTACAAGTTACAAT 47664 || | || | ||| | ||||||||| |||| || |||| | ||| Sbjct 229229 AAAAGTAAAG---CTATGAATTGGGGAAGACAAACTGTTAAAGTGAAAAT 229275 >seq6 Length=382643 Score = 141 bits (156), Expect = 1e-28 Identities = 213/297 (72%), Gaps = 8/297 (3%) Strand=Plus/Plus Query 47381 GTTGTTGCTACTGCATATACAGCTTCACCAGATGAGAATGGCGGTACATATGGCGGAGTA 47440 ||||| || || || || ||||| ||| ||| ||||| || | |||| | Sbjct 338947 GTTGTAGCAACAGCTTACACAGCAGATCCACTTGAAAATGGTTATAAAGCAGGCGACCAA 339006 Query 47441 GTTAAAACAGCAATGGGTCACAACCTATCAGCAAATCCTAGTATGAAAATGGTTGCAGTT 47500 || ||| |||| | || |||||| || |||| ||||| | |||||| | |||||||| Sbjct 339007 GTAAAATCAGCTTTAGGCCACAACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTT 339066 Query 47501 GACCCGAACGTAATCCCACTTGGGTCTCGTATTTATG--TAGAAGGTTACGGAGAAGCAA 47558 || || | || || ||| || ||| || | |||| | ||||||||||||| ||||| Sbjct 339067 GATCCAAGTGTCATTCCA-TTAGGT-TCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAA 339124 Query 47559 TCGCTGGTGATACTGGCGGCGCAATCAAAGGTAATCGTATCGACGTATTGATGCCAAACA 47618 |||||||||||||||| || || || ||||||||| |||||||| || ||||| | | Sbjct 339125 TCGCTGGTGATACTGGTGGAGCTATTAAAGGTAATAAAATCGACGTTTTAATGCC--AGA 339182 Query 47619 AAAAGGTT--TCTAGCGACTGGGGAAGAAAAACAGTACAAGTTACAATCCTAAATTA 47673 ||||||| || || ||||||| | |||||||| ||||| | | |||| || Sbjct 339183 TAAAGGTTCATCAAGTAGCTGGGGACGTAAAACAGTTACAGTTAAAGTATTAAACTA 339239 >seq361 Length=20807 Score = 123 bits (136), Expect = 3e-23 Identities = 167/232 (72%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 47376 TTACAGTTGTTGCTACTGCATATACAGCTTCACCAGATGAGAATGGCGGTACATATGGCG 47435 ||||||| | || || ||||||||||| || ||||||| ||| | ||||| | Sbjct 1059 TTACAGTAGAAGCGACGGCATATACAGCAGATCCGAGTGAGAAT---GGTTCGTATGGTG 1115 Query 47436 GAGTAGTTAAAACAGCAATGGGTCACAACCTATCAGCAAATCCTAGTATGAAAATGGTTG 47495 | || ||| |||||||| || | || |||||||||| | ||||||| | ||| Sbjct 1116 GTCGTGTATTAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAATTG 1175 Query 47496 CAGTTGACCCGAACGTAATCCCACTTGGGTCTCGTATTTATGTAGAAGGTTACGGAGAAG 47555 | ||||| ||||| ||||| || ||||| || | | |||||||| || ||||||| Sbjct 1176 CTGTTGATCCGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGAAG 1235 Query 47556 CAATCGCTGGTGATACTGGCGGCGCAATCAAAGGTAATCGTATCGACGTATT 47607 | || ||||| || || || || || || ||||| |||||||| || ||||| Sbjct 1236 CGATTGCTGGAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGTATT 1287 >seq16 Length=199848 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 47471 GCAAATCCTAGTATGAAAATGGTTGCAGTTGACCCGAACGTAATCCCACTTGGGTCTCGT 47530 |||||||| | |||||| | |||| || || || || |||||| | || ||| | Sbjct 160280 GCAAATCCAAACATGAAATTAATTGCTGTAGATCCATCTGTTATCCCATTAGGTTCTACT 160339 Query 47531 ATTTATGTAGAAGGTTACGGAGAAGCAATCGCTGGTGATACTGGCGGCGCAATCAAAGGT 47590 | ||||||||||| || ||| |||||| ||||| |||||||| | ||||| ||||| Sbjct 160340 GTATATGTAGAAGGATATGGAACAGCAATTGCTGGAGATACTGGTAGTGCAATAAAAGGG 160399 Query 47591 AATCGTATCGACGTATTGATGCCAAA--CA--AAAAGGTTTCTAGCGACTGGGGAAGAAA 47646 || || || |||| |||||||| || ||| ||| |||||||| |||| Sbjct 160400 CATATCATTGATCTATTAATGCCAAATTCAGCTCAAG----CTAATGACTGGGGTAGAAG 160455 Query 47647 AACAGTACAAGTTACAATCCTAAATTAA 47674 |||||| |||||| ||| |||| ||| Sbjct 160456 AACAGTTAAAGTTAAAATTTTAAACTAA 160483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525586624825400