Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_022767.1 Length=81656 Score E Sequences producing significant alignments: (Bits) Value seq1 104 1e-17 >seq1 Length=1156483 Score = 104 bits (114), Expect = 1e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 72557 CCATCATCACGAATAAAACGTTGGATTTCACCGATCATCATAGGAACAGCGTAAGTTGAC 72616 ||||||||||| | |||||||| |||||||| || ||||| ||||| || || ||||| Sbjct 370495 CCATCATCACGTAAGAAACGTTGTATTTCACCAATAATCATTGGAACTGCATATGTTGAA 370554 Query 72617 CACTTCACTTTAAAAGAATCGTCAAACTTATCGAAAGCTTTCAAATAGCCAATAGAAGCT 72676 | ||||| | ||||| ||||| ||||| | | |||||| |||||| | | Sbjct 370555 AATTTCACGTCGAAAGATAAATCAAATTTATCTACCGATTTCAAGAGCCCAATACATCCA 370614 Query 72677 AATTGAAACAAATCAT-TGTTATCATAACCGCGATTCTGAAAACGATATACAACTGACCA 72735 | |||||| | || | || | || || || ||||| |||| || | |||||| ||||| Sbjct 370615 ATTTGAAATAGGTCGTCTGGT-TCGTATCCTCGATTAAGAAACCGCTGTACAACCGACCA 370673 Query 72736 TATGAGCCTTAAATTACGTTGAAC 72759 | ||| | | ||||| |||||| Sbjct 370674 AACGAGGCGCATATTACTTTGAAC 370697 Score = 86.0 bits (94), Expect = 3e-12 Identities = 108/147 (73%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 12183 GAAAAAGATTTAATGGCACGTTTGGTTAGAGCTGAAGCTCAAGGAGAACCATACGCCGGT 12242 |||||| | ||||||||||| || |||| |||||||| || ||| | || || Sbjct 46028 GAAAAAAACTTAATGGCACGCTTAGTTACTGCTGAAGCAGGTGGCGAATCGTATAAAGGA 46087 Query 12243 AAAGTAGCTGTAGCAACAGTTATTCTAAATCGTGTTTCTAATGC---TGATTTTCCTAAT 12299 |||||||| ||||| | |||||| ||||||||||| ||||| | |||||| ||| Sbjct 46088 AAAGTAGCAGTAGCGAAAGTTATACTAAATCGTGT---AAATGCAAAAGGTTTTCCAAAT 46144 Query 12300 ACAATCAGTGGAGTAATTAATCAACCT 12326 ||||| | || || ||| || ||||| Sbjct 46145 ACAATAACAGGCGTTATTTATGAACCT 46171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261157068221965