Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_022769.1 Length=165238 Score E Sequences producing significant alignments: (Bits) Value seq7 149 7e-31 seq16 138 1e-27 seq8 131 2e-25 seq6 129 6e-25 seq361 122 9e-23 >seq7 Length=350003 Score = 149 bits (164), Expect = 7e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 46650 GGTACATACGATGGCGTAGTTAAAACAGCAATGGGGCATAACTTATCTGCAAACCCTAGT 46709 |||||||| | ||| ||| ||| || ||||||||| | ||| | ||||| || | | Sbjct 229034 GGTACATATGGTGGACGCGTTTTAACTGCGATGGGGCATGATTTAACGGCAAATCCGAAT 229093 Query 46710 ATGAAAATGGTCGCAGTTGACCCTAGAGTAATTCCACTTGGTTCTCGTATCTATGTAGAA 46769 |||| ||| ||||||||||||| | |||||| ||| | || ||| | | |||||| Sbjct 229094 ATGAGAATTATCGCAGTTGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAA 229153 Query 46770 GGATATGGTGAAGCAATCGCGGGAGATACTGGTGGAGCAATCAAAGGTAATCGAATCGAT 46829 || ||||| ||||| ||||| || |||||||| | ||||| ||||||||||| || ||| Sbjct 229154 GGCTATGGAGAAGCGATCGCTGGTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGAT 229213 Query 46830 GTATTGATGCCATCTAAATCTCAATCTAGCGACTGGGGAAGAAAAACAGTACAAGTTACA 46889 || || ||| || ||| | || ||| | ||||||||| |||| || |||| | | Sbjct 229214 GTTTTAATGGGTTCAAAAAGTAAAGCTATGAATTGGGGAAGACAAACTGTTAAAGTGAAA 229273 Query 46890 AT 46891 || Sbjct 229274 AT 229275 >seq16 Length=199848 Score = 138 bits (152), Expect = 1e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 46683 GGGCATAACTTATCTGCAAACCCTAGTATGAAAATGGTCGCAGTTGACCCTAGAGTAATT 46742 || ||||| ||| ||||||| || | |||||| | | || || || || || || Sbjct 160265 GGACATAATTTAACTGCAAATCCAAACATGAAATTAATTGCTGTAGATCCATCTGTTATC 160324 Query 46743 CCACTTGGTTCTCGTATCTATGTAGAAGGATATGGTGAAGCAATCGCGGGAGATACTGGT 46802 ||| | |||||| | | ||||||||||||||||| |||||| || |||||||||||| Sbjct 160325 CCATTAGGTTCTACTGTATATGTAGAAGGATATGGAACAGCAATTGCTGGAGATACTGGT 160384 Query 46803 GGAGCAATCAAAGGTAATCGAATCGATGTATTGATGCCATCTAAATCTCAATCTAGCGAC 46862 | ||||| ||||| || || ||| |||| |||||| | | ||||| ||| ||| Sbjct 160385 AGTGCAATAAAAGGGCATATCATTGATCTATTAATGCCAAATTCAGCTCAAGCTAATGAC 160444 Query 46863 TGGGGAAGAAAAACAGTACAAGTTACAATCCTAAACTAA 46901 ||||| |||| |||||| |||||| ||| |||||||| Sbjct 160445 TGGGGTAGAAGAACAGTTAAAGTTAAAATTTTAAACTAA 160483 >seq8 Length=318055 Score = 131 bits (144), Expect = 2e-25 Identities = 123/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 46673 AACAGCAATGGGGCATAACTTATCTGCAAACCCTAGTATGAAAATGGTCGCAGTTGACCC 46732 ||| |||||||| ||| | ||| |||| || || | |||||||||| |||| |||||||| Sbjct 28476 AACTGCAATGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGCTGTTGACCC 28417 Query 46733 TAGAGTAATTCCACTTGGTTCTCGTATCTATGTAGAAGGATATGGTGAAGCAATCGCGGG 46792 | |||||| ||| | || ||| | | |||||||| || || ||||| ||||| || Sbjct 28416 GAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGCTATCGCTGG 28357 Query 46793 AGATACTGGTGGAGCAATCAAAGGTAATCGAATCGAT 46829 |||||||||||| ||||| |||||||| || || ||| Sbjct 28356 AGATACTGGTGGTGCAATTAAAGGTAACCGTATTGAT 28320 >seq6 Length=382643 Score = 129 bits (142), Expect = 6e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 46667 AGTTAAAACAGCAATGGGGCATAACTTATCTGCAAACCCTAGTATGAAAATGGTCGCAGT 46726 ||| ||| |||| | || || |||||| | || || || | |||||| | | ||||| Sbjct 339006 AGTAAAATCAGCTTTAGGCCACAACTTAACAGCTAATCCAAACATGAAACTAATTGCAGT 339065 Query 46727 TGACCCTAGAGTAATTCCACTTGGTTCTCGTATCTATGTAGAAGGATATGGTGAAGCAAT 46786 ||| || || || |||||| | ||||| | | || ||||| || || | |||||| Sbjct 339066 TGATCCAAGTGTCATTCCATTAGGTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAAT 339125 Query 46787 CGCGGGAGATACTGGTGGAGCAATCAAAGGTAATCGAATCGATGTATTGATGCCATCTAA 46846 ||| || |||||||||||||| || ||||||||| |||||| || || |||||| ||| Sbjct 339126 CGCTGGTGATACTGGTGGAGCTATTAAAGGTAATAAAATCGACGTTTTAATGCCAGATAA 339185 Query 46847 ATCTCAATCTAGCGACTGGGGAAGAAAAACAGTACAAGTTACAATCCTAAACTA 46900 | | ||| || ||||||| | |||||||| ||||| | | ||||||| Sbjct 339186 AGGTTCATCAAGTAGCTGGGGACGTAAAACAGTTACAGTTAAAGTATTAAACTA 339239 >seq361 Length=20807 Score = 122 bits (134), Expect = 9e-23 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 46673 AACAGCAATGGGGCATAACTTATCTGCAAACCCTAGTATGAAAATGGTCGCAGTTGACCC 46732 ||| |||||||||||| | ||| | ||||| || | ||||||| | | || ||||| || Sbjct 1126 AACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAATTGCTGTTGATCC 1185 Query 46733 TAGAGTAATTCCACTTGGTTCTCGTATCTATGTAGAAGGATATGGTGAAGCAATCGCGGG 46792 | ||||||||| ||||| || | | |||||||||||||| ||||| || || || Sbjct 1186 GAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGAAGCGATTGCTGG 1245 Query 46793 AGATACTGGTGGAGCAATCAAAGGTAATCGAATCGATGTATT 46834 ||| || ||||| || || ||||| ||||| || |||||||| Sbjct 1246 AGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGTATT 1287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 528597619875600