Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_022771.1 Length=156648 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 1e-14 seq8 86.0 6e-12 >seq6 Length=382643 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/119 (78%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 45633 AAGTTA-TTGCAGTGGACCCTAATGTTATTCCATTAGGATCGAAAGTTTATGTTGAGGGA 45691 |||||| ||||||| || ||||| |||||| | ||||| ||||||||| ||||| ||| Sbjct 157234 AAGTTAATTGCAGTTGATCCTAAAGTTATTAAACTAGGAACGAAAGTTTGGGTTGAAGGA 157175 Query 45692 TACGGAACTGCCGTAGCTGCCGATACGGGTGGAGCTATTAAAGGGAACCGTATTGATGT 45750 ||||| ||| | |||| ||||| ||||| ||||||||||| || |||||||| Sbjct 157174 TACGGTGATGCAATTGCTGGAGATACAGGTGGGGCTATTAAAGGCAATAAAATTGATGT 157116 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 45608 AACTTGAAAGCTAACCCGGGACTAAAAGTTATTGCAGTGGACCCTAATGTTATTCCATTA 45667 ||||| | |||||| || | ||| | |||||||| || || | ||| ||||||||| Sbjct 339028 AACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTTGATCCAAGTGTCATTCCATTA 339087 Query 45668 GGATCGAAAGTTTATGTTGAGGGATACGGAACTGCCGTAGCTGCCGATACGGGTGGAGCT 45727 || || ||||| | ||||| || |||||| || | |||| ||||| ||||||||| Sbjct 339088 GGTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATCGCTGGTGATACTGGTGGAGCT 339147 Query 45728 ATTAAAGGGAACCGTATTGATGTGTTCATCCCTAGCCAGA-GTGCAGCAGAAAACTTTGG 45786 |||||||| || || || || || || || || | | || || || | || || Sbjct 339148 ATTAAAGGTAATAAAATCGACGTTTTAATGCC-AGATAAAGGTTCATCAAGTAGCTGGGG 339206 Query 45787 GCGTAAAACAGTACAAGTAACGGTTTTAAATTA 45819 ||||||||||| ||| | || ||||| || Sbjct 339207 ACGTAAAACAGTTACAGTTAAAGTATTAAACTA 339239 >seq8 Length=318055 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 45632 AAAGTTATTGCAGTGGACCCTAATGTTATTCCATTAGGATCGAAAGTTTATGTTGAGGGA 45691 ||| | || || || ||||| || || || ||||||||||| ||||| | || || || Sbjct 28436 AAAATGATCGCTGTTGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGT 28377 Query 45692 TACGGAACTGCCGTAGCTGCCGATACGGGTGGAGCTATTAAAGGGAACCGTATTGAT 45748 |||||| || | |||| ||||| ||||| || |||||||| |||||||||||| Sbjct 28376 TACGGAGAAGCTATCGCTGGAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGAT 28320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501111490777600