Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_023007.1 Length=168876 Score E Sequences producing significant alignments: (Bits) Value seq2 181 1e-40 seq3 174 2e-38 seq4 89.7 6e-13 >seq2 Length=633208 Score = 181 bits (200), Expect = 1e-40 Identities = 1105/1758 (63%), Gaps = 60/1758 (3%) Strand=Plus/Plus Query 67541 TTAGAGCGTTATGAAGACCGAGTTTCTATTAATGCTTTATACCTTGCTAAAGGGGATTTT 67600 ||||| | |||||||| || || | ||| | | |||||| | | || ||| || Sbjct 183862 TTAGAAAGCTATGAAGATCGTGTAGCAATTGTTTCATTATACTTAGGACGCGGTGATGTT 183921 Query 67601 GAGAAAGCTAAACAGTATGTGCGAG--TGCTTATTAATCAAGAGTATCAACCTGCAACTC 67658 ||| || | ||| || || || || || | || ||| | || ||||| || || | Sbjct 183922 TCGAAGGCAAGACA--ATTCGCAAGCATGATTGTAAAACAAAACTACCAACCAGCGACAC 183979 Query 67659 CAACCTTCTTAAATGCAGGAAGGAAACGTAGTGGTCGAATGGTATCATGTTTCTTACTAG 67718 ||||||| |||||||| ||||| | | || || |||||| || |||||||| ||| Sbjct 183980 CAACCTTTTTAAATGCGGGAAGAAGCAGAAGAGGAGAAATGGTGTCTTGTTTCTTGTTAG 184039 Query 67719 AT-TGCCCAGATACTACAGAAGGTATCATGTACATCATTCAAGCGTGTGCA-CAGTTATC 67776 | || | |||| | | ||| | | |||| | | || | || ||||| Sbjct 184040 AGATGGAC-GATAGCTTAAATTCGATCGGCTTTAACATTAATAC-TGCGATGCAATTATC 184097 Query 67777 ACGTTTCGGTGGTGGAGTAGGTGTTAACCTTTCTAAGATTCGTGCTAGTGGAGAGCCAAT 67836 |||| || ||||||| | | ||| | |||||| | || || | || |||| ||| Sbjct 184098 GAAAATCGGCGGGGGAGTAGCTTTAAACTTATCTAAGCTACGCGCACGCGGTGAGCAAAT 184157 Query 67837 CAAAGGTGTTGAAGGTGCATCATCTGGTGTTATCGGTGTTGCGAAGCTACTAGAAGATAC 67896 |||||| | || || || ||| || | |||| ||| | || |||||| | Sbjct 184158 TAAAGGTATCGACAACGCTGCAAGTGGCGTAGTACCTGTTATGAAATTGCTTGAAGATTC 184217 Query 67897 ATTCTCTCACTTCAATCAGTTGGGTCAACGTAGTGGAAGCGGTGTAGCATACTTGAATAT 67956 || || | |||||| | || ||||| | || ||||| || ||| || || || Sbjct 184218 GTTTTCATATGCGAATCAGCTTGGCCAACGAAAAGGTGCCGGTGCAGTATATTTAAACAT 184277 Query 67957 TTTCCATGATGATATTCTTGAGTTTTTAGACACAAAACAAATCAACGTGGATGAGAAGAA 68016 ||||||| |||||| |||| || | || |||||| |||| || | |||||||||| Sbjct 184278 TTTCCATTGGGATATTATTGAATTCCTTGATACAAAAAAAATAAATGCCGATGAGAAGAG 184337 Query 68017 GCGTTTGAAAACATTATCAATCGGTGTAATTGCCCCAGATAAATTCTTTGAACTTGCTGA 68076 ||| | | | |||||||||| | || | ||| ||| |||||||| |||||||| Sbjct 184338 CCGTATTCAGTCTCTATCAATCGGAATTATCGTTCCAAGTAAGTTCTTTGAGCTTGCTGA 184397 Query 68077 AAAGAATGAGCCATACTTTGTATTCAAANNNNNNNNNNNNNNNNNNNNNNNNGGTATTCA 68136 || || || || | | ||| ||| || | || Sbjct 184398 GAAAAACGAACCTTTCCATGTTTTCGCGCCTTATACGGTTTATAAAGAATATGGCAAGCA 184457 Query 68137 TTTAGATGAGATGGATATGAATGAATGGTACGACAAGTTAGTTAATGACCGA---GACAT 68193 ||||||||| || || || ||||| |||||| | | ||||||| | | || | Sbjct 184458 TTTAGATGATATTGACATTGATGAAATGTACGA----TGAATTAATGAGCAATCCGAAAG 184513 Query 68194 T-AAGAAGCGTAAACTAGAT------GCACGTGACATGTTAACTACTATTGCGAAGACTC 68246 | |||||| ||||||| |||||||| ||| | | || || || | || || Sbjct 184514 TGAAGAAGAAGCCACTAGATATTAGTGCACGTGATATGCTTATTAAAATCGCTATGATTC 184573 Query 68247 AATTAGCATCTGGATACCCATACTTCATGTATCGTGATAATGCAAACAAACTGCATCACT 68306 | | | ||||| ||||||||||| |||| | |||||||| || | |||| | Sbjct 184574 AGCTTGAGTCTGGTTACCCATACTTAATGTTTAAATCAAATGCAAATAATCAACATCCAT 184633 Query 68307 T--AGGAGATTTAGCACCTGTACGAATGAGTAATCTTTGTACCGAAATTTTCCAAGCGCA 68364 | |||| ||| | | |||| ||| || | ||||| ||||| ||||| || Sbjct 184634 TGAAGGATATT--GGAACTGTGAAGATGTCGAACTTATGTACAGAAATCTTCCAGCTTCA 184691 Query 68365 AACAGAATCAGACATTCAAGGTTACAATGGTGTTGACACATTCGGTTATGATATCTCATG 68424 | | ||||| || | | |||| | | ||||| || || |||||| || Sbjct 184692 AGAAACTTCAGAAATAAATGATTACGGTACAGATGACATTATCCGTCGTGATATTAACTG 184751 Query 68425 TAATCTAGGGTCATTAAACCTTGTACGAATGATTGAAGAAGCATTTAAACGTGGTAGCAT 68484 ||| |||| || ||||| | ||| | || ||| | |||| | | Sbjct 184752 TAACTTAGGATCGTTAAATATCGTAAACGTAATGGAAAA------TAAAG-----AAATT 184800 Query 68485 CGAAGAATCTGTATCTACAGGTATTTGGGCTTTAACAACTGTTGCAGACGACACATCAAT 68544 || ||| | || | | || || ||||||||| ||||| | || || || Sbjct 184801 CGT-GAAGCAGTTCATGCGGGAATGGAAGCTTTAACAGCTGTTTCTGATATGACGATTAT 184859 Query 68545 TGATGAAGTACCATCGGTTAAGAAAGCTAACGATGACATGCATTCGGTTGGTCTAGGTGT 68604 | | | |||| | || || ||||| || || || | ||||| ||||| || || | Sbjct 184860 TCCGAATGCACCAACTGTGAAAAAAGCAAATGACGAGCTTCATTCAGTTGGACTTGGAGC 184919 Query 68605 AATGAACTGGCATGGTCTATTAGCTAAAAACTTCATGGTGTATGGAAGTGAAGAATCTAT 68664 |||||||| || || ||||| ||||| || | |||| ||||| |||| | | Sbjct 184920 AATGAACTTACACGGATATTTAGCAAAAAATAAAATCGCTTATGAAAGTGCAGAAGCGAA 184979 Query 68665 TGACTTAGCAA--ACGTACTAGGTGCAATGATTCGCTACTACTCTCTT---AAAACTTCA 68719 || || || || | || || ||| | ||||||||| || |||| | Sbjct 184980 AGAATTCGCTCGTACATTCTTTATG--ATGTTAAATTACTACTCTATTGAGAAAAGT--- 185034 Query 68720 ATGGAGATTGCTAAAGAGAGAAAGCAA-ACATTCAAACACTTTGATAAGAGTCAATACTC 68778 ||||| || |||| ||| | || || | ||||| || |||| ||||| | | || | Sbjct 185035 ATGGAAATCGCTACAGAAA-AAGGCGAGACATTTAAGGACTTCGATAAATCTGATTATGC 185093 Query 68779 TAAAGGCAAAGGTTTAGAAATGTACATAGAAGAAAGCC-ACGCACCATCTACTGACCAAG 68837 || |||| | || |||| ||| | | || || || ||| ||||| ||| Sbjct 185094 GAATGGCACATACTTCGAAAAGTATGAA-ACGACAGATTACAGCCCAGTAACTGAAAAAG 185152 Query 68838 TAGCAGAAA-TGTTAAATGGAATCTATATTCCTACACAAGATGACTGGGCTAAACTAGTT 68896 | ||| || | || | ||||| ||||||| ||| |||| || ||| | | || Sbjct 185153 TT-CAGCAACTATTTGAAGGAATTCATATTCCAACAAAAGAAGATTGGACAAGTTTAAAA 185211 Query 68897 GCTGACATTCAAGAACATGGTTTATATCATGCTTACTTAAATGCTATCGCACCAACTGGG 68956 | | | || | |||||||||| | | || ||| || || ||||| Sbjct 185212 GAGCAAGTACAGAAGAATGGTTTATACAACTCATATCGTCTTGCCATTGCTCCAACACAA 185271 Query 68957 TCAATCTCATACGTGCA---TTCAGCTACAAGTGGAGTAATGCCAATCACAGAACACGTA 69013 |||||| ||||| || | || || |||| | ||||||| ||| | || | Sbjct 185272 TCAATCAGTTACGTTCAAAATGCAACTTCAAGCG---TAATGCCGATCGTAAGTCAAATC 185328 Query 69014 GAAACACGTGTGTATGGAGATTCAACAACTCATTATCCAATGCCATATCTGAATAAAGAT 69073 ||| || | |||| || | ||||| ||||||||||||| ||| | |||||| Sbjct 185329 GAATCAAGAACATATGCGAATGCGACAACATATTATCCAATGCCGTATTTATCAAAAGAT 185388 Query 69074 ACATACTGGTACTACACTACAGCTTATGACATGGATATGTACGATATGATAGATGTTGTA 69133 || | ||||||||| | | |||| || ||| || || | | || ||| | | Sbjct 185389 ACGTTCTGGTACTATAAATCTTCTTACGATATGAATCAGTTTAAATTAATTGATTTAATC 185448 Query 69134 GCTACATGGCAAAAACATATTGACCAAGGAATTAGTTGTACACTATTCGTCAACAGTGAC 69193 || | ||| ||||||||||||||||||||||| | || | ||| || ||||| Sbjct 185449 GCAGAAATTCAAGAACATATTGACCAAGGAATTAGTACAATTCTTTACGTTAATAGTGAT 185508 Query 69194 ATCGCAACAAATGAACTGGCACGTTATTACATCTATGGTCACAAGAAAGGTCTAAAGAGC 69253 || ||||| |||| | |||||||| |||||||||| || || ||||| ||||||| Sbjct 185509 ATTTCAACACGTGAATTAGCACGTTACTACATCTATGCACATAAAAAAGGCTTAAAGAGT 185568 Query 69254 CTTTACTACACTAGAACA 69271 || || || || |||||| Sbjct 185569 CTGTATTATACGAGAACA 185586 >seq3 Length=500241 Score = 174 bits (192), Expect = 2e-38 Identities = 215/294 (73%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 107224 ATATCTGTCTCCACCACTTAGAGAGTAGCAGATTTCAATTCCGATAGACTTCATATTACC 107283 |||||| || ||||| |||||||| ||||| ||||| | ||||||||| || |||||| Sbjct 528 ATATCTATCCCCACCGCTTAGAGAATAGCAAATTTCCACTCCGATAGATTTACGATTACC 469 Query 107284 GTTTCCAGTTCCATCTCCACAATGCCAAGCATTACGGTTTGTAGGGATACCTTGAACAAC 107343 ||||| | ||||| || ||||||||||||||| | | |||||||| || | Sbjct 468 ATTTCCGTTACCATCACCTGCATGCCAAGCATTACGATCAAACAGAATACCTTGTACTGC 409 Query 107344 TTCGAAATCATCAACTGCAAAATGGAATGAAGTAGCATTACTGTTTGTAATCATGTACTG 107403 ||| ||||| ||||||| ||| || || | |||| | || |||||| ||| Sbjct 408 TTCTTTGTCATCTACTGCAACATGAAACGACACTGAATTATTATTCCCAATCATATACGA 349 Query 107404 CACCTCGTTATTCGCACTTGCATCATTGTAAGTATTGTGGATAGTAATGTATTCTGCTGT 107463 | ||| || | || |||||||||||| ||||| || | || ||| |||||| ||| Sbjct 348 TATCTCATTTTCTGCTGATGCATCATTGTACGTATTATGTACTGTGATGAATTCTGGTGT 289 Query 107464 CATAGTGTTAGGACACTTTAAGCTGTACTTACTTGAATCCACCAATTTTTGTCT 107517 ||| || || |||||||||| | || ||||||| |||||| ||||||| ||| Sbjct 288 CATTGTATTGGGACACTTTATACCATATTTACTTGGATCCACTAATTTTTTTCT 235 >seq4 Length=425142 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 106621 GTCGTTTTTAATCCATTGGTCGCCACCAAGATTTAACCAACCATCTTTCAATGCCCATAC 106680 || ||| | ||||||||||| |||||||||||||||||| | ||| | ||||||| Sbjct 212963 GTTGTTATAAATCCATTGGTTACCACCAAGATTTAACCAATCCCCTTGTTTTCCCCATAC 212904 Query 106681 TTTATATGATTCTGGTGCATTCAATTGACGGATTACTGAGTAACCTGTCCCTGCTCCAGA 106740 || ||||| |||| | ||| ||||||||||| || | | ||| || |||| Sbjct 212903 TTGATATGCTTCTCCTTTATTTAATTGACGGATAACACCATGATTTGTTGATGGTCCACT 212844 Query 106741 ACGTAGGTTGACATTATATCCAGTGATATAAGCT 106774 | |||||| || ||| ||||| ||||||||| Sbjct 212843 TCTTAGGTTTACGTTAAATCCATCAATATAAGCT 212810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540238427519200