Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_023501.1 Length=159590 Score E Sequences producing significant alignments: (Bits) Value seq6 136 4e-27 seq8 125 7e-24 seq7 125 7e-24 seq16 123 3e-23 seq361 84.2 2e-11 >seq6 Length=382643 Score = 136 bits (150), Expect = 4e-27 Identities = 204/290 (70%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 143024 ACTAGTTTAAGATTGTAACTTTTACTGTTTTAACGCCCCAGTTGCTAGATTGTGATTTGT 143083 |||||||||| | | ||||| | ||||||||| |||||| | || ||| ||| | Sbjct 339241 ACTAGTTTAATACTTTAACTGTAACTGTTTTACGTCCCCAGCTACTTGATGAACCTTTAT 339182 Query 143084 TAGGCATTAGTACGTCGATACGATTTCCTTTAATAGCTCCACCAGTATCTGATGCAATTG 143143 ||||||| |||||||| ||| ||||||||||||||||||||||| || |||| Sbjct 339181 CTGGCATTAAAACGTCGATTTTATTACCTTTAATAGCTCCACCAGTATCACCAGCGATTG 339122 Query 143144 CTGTTCCGTAACCTTCTACGTGAACCTTAGAACCTAATGGAATCACTCGAGGGTCGACTG 143203 || |||||||||||| || || || |||||||||||||| || | || || |||| Sbjct 339121 CTACTCCGTAACCTTCAACCCATACTTTTGAACCTAATGGAATGACACTTGGATCAACTG 339062 Query 143204 CGATAATCTTAGCTGATGGATTTGCTGTTAAATCGAATCCTGTAGCTGTTAGAACTCGTC 143263 | || | || |||||| |||||||| | | ||| ||||| | ||| | Sbjct 339061 CAATTAGTTTCATGTTTGGATTAGCTGTTAAGTTGTGGCCTAAAGCTGATTTTACTTGGT 339002 Query 143264 CACCATAAGTACCTCCGTTTTCGGATGGGTCAGCAGTGTAAGCTGTTGCT 143313 | || || || ||||| ||| || || ||||||||||||||| Sbjct 339001 CGCCTGCTTTATAACCATTTTCAAGTGGATCTGCTGTGTAAGCTGTTGCT 338952 >seq8 Length=318055 Score = 125 bits (138), Expect = 7e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 143098 TCGATACGATTTCCTTTAATAGCTCCACCAGTATCTGATGCAATTGCTGTTCCGTAACCT 143157 || ||||| || |||||||| || |||||||||||| || || ||| |||||||||| Sbjct 28321 TCAATACGGTTACCTTTAATTGCACCACCAGTATCTCCAGCGATAGCTTCTCCGTAACCT 28380 Query 143158 TCTACGTGAACCTTAGAACCTAATGGAATCACTCGAGGGTCGACTGCGATAATCTTAGCT 143217 ||||| || ||||| |||||||| || ||| ||||| || ||||| || || Sbjct 28381 TCTACCCATACTTTAGATCCTAATGGGATTACTTTCGGGTCAACAGCGATCATTTTCATA 28440 Query 143218 GATGGATTTGCTGTTAAATCGAATCCTGTAGCTGTTAGAACTCGTCCACCATAAGTACCT 143277 |||||| || |||||||| || | || |||| || || || ||||| || || Sbjct 28441 TTTGGATTCGCAGTTAAATCATGACCCATTGCAGTTAATACACGGCCGCCATATGTGCCA 28500 Query 143278 CCGTTTTCGGATGGGTCAGCAGTGTAAGCTGTTGCTTTAACT 143319 ||||||||| |||| ||| || || ||||| ||| |||| Sbjct 28501 CCGTTTTCGCTCGGGTGAGCTGTATATGCTGTAGCTACAACT 28542 >seq7 Length=350003 Score = 125 bits (138), Expect = 7e-24 Identities = 166/227 (73%), Gaps = 5/227 (2%) Strand=Plus/Minus Query 143088 CATTAGTACGTCGATACGATTTCCTTTAATAGCTCCACCAGTATCTGATGCAATTGCTGT 143147 ||||| || || |||||||| |||||||| || | |||||||| || || ||| Sbjct 229222 CATTAAAACATCAATACGATTACCTTTAATTGCACTTCCAGTATCACCAGCGATCGCTTC 229163 Query 143148 TCCGTAACCTTCTACGTGAACCTTAGAACCTAATGGAATCACTCGAGGGTCGACTGCGAT 143207 ||| || |||||||| || ||||| |||||||| || ||| ||||| |||||||| Sbjct 229162 TCCATAGCCTTCTACCCATACTTTAGATCCTAATGGGATTACTTTCGGGTCAACTGCGAT 229103 Query 143208 AA-TCTTAGCTGATGGATTTGCTGTTAAATCGAATCCTGTAGCTGTTAGAACTCGTCCAC 143266 || ||| | | |||||||| |||||||| || | || |||| ||| ||||||| Sbjct 229102 AATTCTCATAT-TCGGATTTGCCGTTAAATCATGCCCCATCGCAGTTAAAACGCGTCCAC 229044 Query 143267 CATAAGTACCTCCGTTTTCGGATGGGTCAGCAGTGTAAGCTGTTGCT 143313 |||| ||| || ||||| ||| |||||||| || ||||| ||| Sbjct 229043 CATATGTA---CCATTTTCACTTGGATCAGCAGTATACGCTGTCGCT 229000 >seq16 Length=199848 Score = 123 bits (136), Expect = 3e-23 Identities = 222/318 (70%), Gaps = 11/318 (3%) Strand=Plus/Minus Query 143026 TAGTTTAAGATTGTAACTTTTACTGTTTTAACGCCCCAGTTGCTAGATTGTGATTTGTTA 143085 |||||||| ||| ||||||| |||||| | ||||||| ||| ||| | | || Sbjct 160482 TAGTTTAAAATTTTAACTTTAACTGTTCTTCTACCCCAGTCATTAGCTTGAGCTGAATTT 160423 Query 143086 GGCATTAGTACGTCGATACGATTTCCTTTAATAGCTCCACCAGTATCTGATGCAATTGCT 143145 ||||||| || || || || ||||| || || | |||||||||| ||||||||| Sbjct 160422 GGCATTAATAGATCAATGATATGCCCTTTTATTGCACTACCAGTATCTCCAGCAATTGCT 160363 Query 143146 GTTCCGTAACCTTCTACGTGAACCTTAGAACCTAATGGAATCACTCGAGGGTCGACTGCG 143205 ||||| || |||||||| | || ||||||||||||| || || || || || || Sbjct 160362 GTTCCATATCCTTCTACATATACAGTAGAACCTAATGGGATAACAGATGGATCTACAGCA 160303 Query 143206 A-TAATCTTAGCTGATGGATTTGCTGTTAAATCGAATCCT---GTAGCTGTTAGAACTCG 143261 | |||| | | | ||||||||| ||||||| |||| ||| | || || Sbjct 160302 ATTAATTTCATGT-TTGGATTTGCAGTTAAATTATGTCCTAACTTAGATTTT---ACAGT 160247 Query 143262 TCCACCATAAGTACCTCCGTTTTCGGATGGGTCAGCAGTGTAAGCTGTTGCT-TTAACTA 143320 | |||| || |||||||| ||||||||||| || ||||| |||||| ||| || Sbjct 160246 TTCACCCGGTTTATAGCCGTTTTCAGATGGGTCAGCTGTATAAGCGGTTGCTGTTACGTA 160187 Query 143321 CGATTGTTTT--ACCTTG 143336 ||| |||| |||||| Sbjct 160186 AAATTCTTTTCCACCTTG 160169 >seq361 Length=20807 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 143091 TAGTACGTCGATACGATTTCCTTTAATAGCTCCACCAGTATCTGATGCAATTGCTGTTCC 143150 || ||| || ||||||||||||||||| || ||||| || ||| ||||| ||| ||| Sbjct 1288 TAATACATCAATACGATTTCCTTTAATCGCACCACCGGTGTCTCCAGCAATCGCTTCTCC 1229 Query 143151 GTAACCTTCTACGTGAACCTTAGAACCTAATGGAATCACTCGAGGGTCGACTGCGATAAT 143210 || |||||||| || || || || | ||||| ||| || || || || || | Sbjct 1228 ATATCCTTCTACCCATACTTTTGATCCAAGCGGAATTACTTTCGGATCAACAGCAATTAC 1169 Query 143211 CTTAGCTGATGGATTTGCTGTTAAATCGAATCCTGTAGCTGTTAGAACTCGTCCACCATA 143270 || |||||||||||||||||| || | || |||| || || |||||||| Sbjct 1168 TTTCATATTTGGATTTGCTGTTAAATCATGCCCCATTGCAGTTAATACACGACCACCATA 1109 Query 143271 AGTACC 143276 | ||| Sbjct 1108 CGAACC 1103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510525250010000