Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq16 87.8 3e-12 seq2489 84.2 3e-11 seq69 84.2 3e-11 >seq16 Length=199848 Score = 87.8 bits (96), Expect = 3e-12 Identities = 69/80 (86%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 93934 AAAAATG-CGGGGGTAACTGGGCTCGAACCAGTGCATGACGGAATCAAAGTCCGTTGCCT 93992 ||||||| | ||| || |||| ||||||||| |||||||||| |||||||||||||||| Sbjct 1386 AAAAATGGCTGGGCTAGCTGGATTCGAACCAGCGCATGACGGAGTCAAAGTCCGTTGCCT 1327 Query 93993 TACCAACTTGGCTATACCCC 94012 |||| |||||||||| ||| Sbjct 1326 TACC-GCTTGGCTATAGCCC 1308 >seq2489 Length=589 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 93940 GCGGGGGTAACTGGGCTCGAACCAGTGCATGACGGAATCAAAGTCCGTTGCCTTACCAAC 93999 || ||| || |||| ||||||||| |||||||||| |||||||||||||||||||| | Sbjct 508 GCTGGGCTAGCTGGATTCGAACCAGCGCATGACGGAGTCAAAGTCCGTTGCCTTACC-GC 450 Query 94000 TTGGCTATACCCC 94012 ||||||||| ||| Sbjct 449 TTGGCTATAGCCC 437 >seq69 Length=88854 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 93936 AAATG-CGGGGGTAACTGGGCTCGAACCAGTGCATGACGGAATCAAAGTCCGTTGCCTTA 93994 ||||| | ||| || |||| ||||||||| |||||||||| |||||||||||||||||| Sbjct 610 AAATGGCTGGGCTAGCTGGATTCGAACCAGCGCATGACGGAGTCAAAGTCCGTTGCCTTA 669 Query 93995 CCAACTTGGCTATACCCC 94012 || |||||||||| ||| Sbjct 670 CC-GCTTGGCTATAGCCC 686 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 93936 AAATG-CGGGGGTAACTGGGCTCGAACCAGTGCATGACGGAATCAAAGTCCGTTGCCTTA 93994 ||||| | ||| || |||| ||||||||| |||||||||| |||||||||||||||||| Sbjct 88024 AAATGGCTGGGCTAGCTGGATTCGAACCAGCGCATGACGGAGTCAAAGTCCGTTGCCTTA 88083 Query 93995 CCAACTTGGCTATACCCC 94012 || |||||||||| ||| Sbjct 88084 CC-GCTTGGCTATAGCCC 88100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710242855805200