Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_024137.1 Length=152778 Score E Sequences producing significant alignments: (Bits) Value seq7 275 6e-69 seq4 179 4e-40 seq361 122 9e-23 seq8 96.9 3e-15 seq5 91.5 1e-13 seq6 89.7 5e-13 >seq7 Length=350003 Score = 275 bits (304), Expect = 6e-69 Identities = 386/540 (71%), Gaps = 5/540 (1%) Strand=Plus/Minus Query 24298 TCGCACTTACCGATACCAGGTACTTGACCATACTCATCGTATTGCCATAGGTCACAAGGG 24357 || ||||| |||||||||| || | || || ||||||||| | ||||| | Sbjct 349239 TCACACTTGCCGATACCAGCCACATTCCCTGTTTCTGTGTATTGCCAAATATCACATGAA 349180 Query 24358 TAAGCAGGTTT---AGCTCCGTAACGAGGAATCCAAGTGAAGTCACATTTAATCTGTGCT 24414 || || ||||| | | ||||||||||||||||| || ||| | || | | ||| Sbjct 349179 TACGCCGGTTTGTTACCACCGTAACGAGGAATCCATACAAAATCAGAATTGAAATTTGCC 349120 Query 24415 GCTCCGAACTCTTCATATTTGTGGTGTCCGACGTATAGACCAACTTTTTTAGCTCCTAGT 24474 ||| || |||| | || || | | |||| |||| | || |||||||||| | Sbjct 349119 ATTCCAAATGGAGCATACATATGATGAGCAATATATAAACCAGCCTTCTTAGCTCCTAAT 349060 Query 24475 CGGTACAGTTCGTCAATGAACGCTTGCGTTCCTGCACGCATGTCACTCATAGTTGTTACT 24534 | | | ||| ||||| || ||||| | || || | ||| || |||| ||| ||||| Sbjct 349059 CTGCGTAATTCATCAATAAAAGCTTGTGCACCCGCTCTCATATCGTTCATTGTTCTTACT 349000 Query 24535 TCTACGTCTGCAACCCAAAATAGTGAGTCTTTATCTCCACGGTTCCAAAAGTCTCTAGCT 24594 |||||||| || ||||||| | || | |||||| |||||||||||||||||||| ||| Sbjct 348999 TCTACGTCAGCTACCCAAACTGTTGCATTTTTATCACCACGGTTCCAAAAGTCTCTTGCT 348940 Query 24595 TCTACTTTCGCATCTTCTACAGAAACGAAACGGCAGAATGCGTAGCTACCGAACGGGATG 24654 |||| ||||| ||||| ||||||||||| ||||| || || |||| ||||| || Sbjct 348939 TCTATCCGTGCATCCTCTACTGAAACGAAACGACAGAACGCATAATTACCAAACGGAATA 348880 Query 24655 TTGCGAGCTTTCATAGCTGCTACGTAGTCCTTATATACAGGATCAACATAGTTAGAACCG 24714 || || |||||||| ||| ||| || | ||||||| |||||| |||||||| ||||| Sbjct 348879 TTCCGTGCTTTCATTGCTTGTACATAATTTTTATATAAAGGATCTACATAGTTTGAACCA 348820 Query 24715 TCTTGTACACGAGCAATAACTAAATCTAGTTGACCTTTGGCAGTATCCCAATCAGGACTC 24774 ||||| ||||| ||||| || ||||| | ||| | || ||||||| | | Sbjct 348819 TCTTGCACACGTGCAATTACGAAATCCAATTGTGGTGCTGCGATATCCCAGTTAATGTCG 348760 Query 24775 CCATTCCATTTAGACATATCAACGATGTAACCCATAATATCTCTCCTCTACTGTTTTATT 24834 ||||||||||| || ||||| || || |||||||| ||| | | ||| || ||| ||| Sbjct 348759 CCATTCCATTTCGAAATATCCACAATATAACCCAT--TATTTAACATCTCCTTTTTCATT 348702 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 47053 ACAGTGGAAGCAACTGCATACACGCCACATCCAAGTGAGAATGGTGGTACATACGGTGGA 47112 || || | ||| || || || || | |||||||||| |||||| ||||| |||||| Sbjct 228992 ACGGTAGTAGCGACAGCGTATACTGCTGATCCAAGTGAAAATGGT---ACATATGGTGGA 229048 Query 47113 CAAGTACTAACTGCAACAGGATTCAACTTGAGTGCTAACCCTAACGCTAGAGTTATCGCA 47172 | || ||||||| | || | || | || || || || ||| |||||||| Sbjct 229049 CGCGTTTTAACTGCGATGGGGCATGATTTAACGGCAAATCCGAATATGAGAATTATCGCA 229108 Query 47173 GTAGACCCACGAGTAATTCCGCTAGGGACGAGAGTTCATGTCGAAGGATATGGAGAAGCG 47232 || ||||| |||||| || |||| | | ||| || ||||| |||||||||||| Sbjct 229109 GTTGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAGAAGCG 229168 Query 47233 ACTGCGCTAGATACAGGTGGAGCTATTAAAGGTAATCGTATTGACGT 47279 | || ||||| || | || |||||||||||||||||||| || Sbjct 229169 ATCGCTGGTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGT 229215 >seq4 Length=425142 Score = 179 bits (198), Expect = 4e-40 Identities = 390/576 (68%), Gaps = 11/576 (2%) Strand=Plus/Minus Query 24268 AGTGACTTGTCCCCGTTTAATCGGTTAAGGTCGCACTTACCGATACCAGGTACTTGACCA 24327 |||||||| | || |||||| || || || || || || |||||||| || | || Sbjct 334289 AGTGACTTATTTCCTACTAATCGATTCAGATCACATTTCCCAATACCAGGAACATTCCCT 334230 Query 24328 TACTCATCGTATTGCCATAGGTCACAAGGGTAAGCAGGTTTAG---CTCCGTAACGAGGA 24384 | || |||||||| | || || || || || | ||| |||| |||||||| Sbjct 334229 GAATCCGTATATTGCCACATATCGCATGGATATGCTGACTTATTCCCTCCATAACGAGGG 334170 Query 24385 ATCCAAGTGAAGTCACATTTAATCTGTGCTGCTCCGAACTCTTCATATTTGTGGTGTCCG 24444 ||||| |||| ||| || ||| | |||||| || | ||| |||| ||||| Sbjct 334169 ATCCATATGAAATCAGCTTCAATATTACATGCTCCAAATGATAAATACGTGTGATGTCCT 334110 Query 24445 ACGTATAGACCAACTTTTTTAGCTCCTAGTCGGTACAGTTCGTCAATGAACGCTTGCGTT 24504 ||||||| || ||||||| | |||| ||| | ||| ||||| || || || || Sbjct 334109 ACGTATAATCCTACTTTTTCCACACCTAAACGGCGTAATTCATCAATAAATGCCTGTGTC 334050 Query 24505 CCTGCACGCATGTCACTCATAGTTGTTACTTCTACGTCTGCAACCCAAAA--TAGTGAGT 24562 || | |||| || ||| ||| ||||||| ||| || |||||||| ||| || Sbjct 334049 CCGCCTTGCATATCTACCATCGTTTGAACTTCTATGTCCGCTACCCAAAACTTAGC-AGA 333991 Query 24563 CTTTATCTCCACGGTTCCAAAAGTCTCTAGCTTCTACTTTCGCATCTTCTACAGAAACGA 24622 || ||| ||||| |||||||| ||| || ||| || ||||| | | ||| | | Sbjct 333990 -TTGATCACCACGATTCCAAAAATCTTGTGCCTCTTTCTTTGCATCAGCAATAGATATAA 333932 Query 24623 AACGGCAGAATGCGTAGCTACCGAACGGGATGTTGCGAGCTTTCATAGCTGCTACGTAGT 24682 ||||||| || || || ||||||| ||||| | | |||||| | || || | Sbjct 333931 AACGGCAAAAAGCATAATTACCGAATGGGATACTATGCTTTTTCATTTCACTAACATAAT 333872 Query 24683 CCTTATATACAGGATCAACATAGTTAGAACCGTCTTGTACACGAGCAATAACTAAATCTA 24742 | ||| | | ||| || ||||| || ||||| || | |||||| |||||||||| Sbjct 333871 TTTGATACATAAAATCCACCGTATTAGAGCCATCTTGAACTCTAGCAATCACTAAATCTA 333812 Query 24743 GTTGACCTTTGGCAGTATCCCAATCAGGACTCCCATTCCATTTAGACATATCAACGATGT 24802 ||| | ||| ||||||||| | | | ||||||||||| || ||||| || || | Sbjct 333811 ACTGAGATGCTGCAATATCCCAATTAATAGTTCCATTCCATTTTGAAATATCTACAATAT 333752 Query 24803 AACCCATA-ATATC-TCTCCTCT--ACTGTTTTATT 24834 | |||||| || || ||||||| | ||| ||||| Sbjct 333751 ACCCCATACATTTCAGCTCCTCTTGAATGTCTTATT 333716 >seq361 Length=20807 Score = 122 bits (134), Expect = 9e-23 Identities = 169/236 (72%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 47050 ATCACAGTGGAAGCAACTGCATACACGCCACATCCAAGTGAGAATGGTGGTACATACGGT 47109 || ||||| ||||| || ||||| || || |||| |||||||||||| | || ||| Sbjct 1058 ATTACAGTAGAAGCGACGGCATATACAGCAGATCCGAGTGAGAATGGTT---CGTATGGT 1114 Query 47110 GGACAAGTACTAACTGCAACAGGATTCAACTTGAGTGCTAACCCTAACGCTAGAGTTATC 47169 || | ||| ||||||||| || | || | || || || || | ||| || Sbjct 1115 GGTCGTGTATTAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAATT 1174 Query 47170 GCAGTAGACCCACGAGTAATTCCGCTAGGGACGAGAGTTCATGTCGAAGGATATGGAGAA 47229 || || || || |||||||||||| || | | ||| || ||||||||||||||| Sbjct 1175 GCTGTTGATCCGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGAA 1234 Query 47230 GCGACTGCGCTAGATACAGGTGGAGCTATTAAAGGTAATCGTATTGACGTACTAGT 47285 |||| ||| ||| || ||||| || |||||||| ||||||||||| ||| |||| Sbjct 1235 GCGATTGCTGGAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGTATTAGT 1290 >seq8 Length=318055 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 47053 ACAGTGGAAGCAACTGCATACACGCCACATCCAAGTGAGAATGGTGGTACATACGGTGGA 47112 ||||| | ||| || ||||| || | || || || || || ||||| ||||| || || Sbjct 28544 ACAGTTGTAGCTACAGCATATACAGCTCACCCGAGCGAAAACGGTGGCACATATGGCGGC 28485 Query 47113 CAAGTACTAACTGCAACAGGATTCA--ACTTGAGTGCTAACCCTAACGCTAGAGTTATCG 47170 | ||| ||||||||| || ||| | || | ||| || || || | | | |||| Sbjct 28484 CGTGTATTAACTGCAATGGG--TCATGATTTAACTGCGAATCCAAATATGAAAATGATCG 28427 Query 47171 CAGTAGACCCACGAGTAATTCCGCTAGGGACGAGAGTTCATGTCGAAGGATATGGAGAAG 47230 | || ||||| |||||| || |||| | | ||| || ||||| || ||||||| Sbjct 28426 CTGTTGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAG 28367 Query 47231 CGACTGCGCTAGATACAGGTGGAGCTATTAAAGGTAATCGTATTGA 47276 | | || |||||| ||||| || ||||||||||| |||||||| Sbjct 28366 CTATCGCTGGAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGA 28321 >seq5 Length=406804 Score = 91.5 bits (100), Expect = 1e-13 Identities = 168/246 (68%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 34235 AAAACTGTACAACTAGAAGAGTTTAAAGACTACTACATCACTGCACCTATCATCGTTAAG 34294 ||||||||| || || || |||| | || | ||||| |||| ||||| ||||| Sbjct 285990 AAAACTGTATTGCTTGATGA---TAAAAAGTATAAAATCACGTCACCAATCATTGTTAAA 286046 Query 34295 AAGAATGTTGAGTTACTGTTTGGTTACGGGACAAAGCTAGTTGTAGGTGGGAACGTACGT 34354 || ||| | ||| | ||||||||||| | | | || || | || ||| | | Sbjct 286047 AAAGGTGTGAAATTATTATTTGGTTACGGATCCCAATTTGTAGTTGAGGGAAACTTTAGA 286106 Query 34355 GTACTGGAACTAGAGACGAACGCATCCGTAACAAATCCGTACATCGCTATTGACGATCCG 34414 || | |||||||||| ||||||||| | | |||| || ||||||||||||| Sbjct 286107 GTTTTAGAACTAGAGAAAAACGCATCCATTGAAGGAGCGTATATAACTATTGACGATCCT 286166 Query 34415 ACATTCGATTCTGCGGTCTTCTACCTAGACGGTAAGAACAAGTTCTATAACACATGGAAT 34474 | ||| | |||| || | || |||||||||| || || | |||||||| ||||| Sbjct 286167 AAATTTAACTCTGAAGTTATTTATTTAGACGGTAAAAATAAATATTATAACACTTGGAAC 286226 Query 34475 AGAACA 34480 | |||| Sbjct 286227 AAAACA 286232 >seq6 Length=382643 Score = 89.7 bits (98), Expect = 5e-13 Identities = 125/174 (72%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 47163 AGTTA-TCGCAGTAGACCCACGAGTAATTCCGCTAGGGACGAGAGTTCATGTCGAAGGAT 47221 ||||| | ||||| || || ||| ||| ||||| |||| |||| || ||||||| Sbjct 157233 AGTTAATTGCAGTTGATCCTAAAGTTATTAAACTAGGAACGAAAGTTTGGGTTGAAGGAT 157174 Query 47222 ATGGAGAAGCGACTGCGCTAGATACAGGTGGAGCTATTAAAGGTAATCGTATTGACGTAC 47281 | || || || | ||| |||||||||||| ||||||||||| ||| ||||| || | Sbjct 157173 ACGGTGATGCAATTGCTGGAGATACAGGTGGGGCTATTAAAGGCAATAAAATTGATGTTC 157114 Query 47282 TAGTACCGACAGATTCACAAGCAAATGCTTGGGGTCGAAAACAAGTGAAAGTTA 47335 | | || ||||| |||||| || ||||| || ||| |||||| | ||| Sbjct 157113 TGTTTCCTACAGAAAAGCAAGCACGTGAATGGGGACGTAAAAAAGTGAGAATTA 157060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488728333663600