Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_024207.1 Length=159656 Score E Sequences producing significant alignments: (Bits) Value seq6 179 4e-40 seq16 156 4e-33 seq8 156 4e-33 seq7 150 2e-31 seq361 120 3e-22 >seq6 Length=382643 Score = 179 bits (198), Expect = 4e-40 Identities = 219/297 (74%), Gaps = 4/297 (1%) Strand=Plus/Plus Query 46586 GTGGTCGCAACAGCTTATACAGCAGACCCAGCAGAGAATGGTGGTACATACGGTGGAGTA 46645 || || ||||||||||| |||||||| ||| || |||||| || | || | | Sbjct 338947 GTTGTAGCAACAGCTTACACAGCAGATCCACTTGAAAATGGTTATAAAGCAGGCGACCAA 339006 Query 46646 GTTAAAACAGCAACAGGATTTAATTTAACAGCAAATCCTAGCGCAAAAGTAATCGCAGTT 46705 || ||| |||| ||| || |||||||| ||||| | | ||| |||| |||||| Sbjct 339007 GTAAAATCAGCTTTAGGCCACAACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTT 339066 Query 46706 GACCCACGAGTAATTCCATTAGGTTCTAAAGTATACGTAGAAGGTTACGGAGAGGCAATG 46765 || ||| | || |||||||||||||| ||||||| || ||||||||||||| ||||| Sbjct 339067 GATCCAAGTGTCATTCCATTAGGTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATC 339126 Query 46766 GCACTAGATACTGGTGGCGCAATCAAAGGTAACCGCATCGATGTATTAATGCCAAACAAC 46825 || ||||||||||| || || |||||||| ||||| || ||||||||| | | Sbjct 339127 GCTGGTGATACTGGTGGAGCTATTAAAGGTAATAAAATCGACGTTTTAATGCCAGATA-- 339184 Query 46826 AAAGT--ATCGAATGACTGGGGACGAAAAACAGTTAACGTTACAATCTTAAACTAGT 46880 || || ||| | | ||||||||| |||||||||| |||| | | |||||||||| Sbjct 339185 AAGGTTCATCAAGTAGCTGGGGACGTAAAACAGTTACAGTTAAAGTATTAAACTAGT 339241 >seq16 Length=199848 Score = 156 bits (172), Expect = 4e-33 Identities = 209/289 (72%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 46592 GCAACAGCTTATACAGCAGACCCAGCAGAGAATGGTGGTACATACGGTGGAGTAGTTAAA 46651 ||||| ||||||||||| |||||| | || || || || | |||| | || ||| Sbjct 160196 GCAACCGCTTATACAGCTGACCCATCTGAAAACGGCTATAAACCGGGTGAAACTGTAAAA 160255 Query 46652 ACAGCAACAGGATTTAATTTAACAGCAAATCCTAGCGCAAAAGTAATCGCAGTTGACCCA 46711 | |||| ||||||||| |||||||| | | ||| |||| || || || ||| Sbjct 160256 TCTAAGTTAGGACATAATTTAACTGCAAATCCAAACATGAAATTAATTGCTGTAGATCCA 160315 Query 46712 CGAGTAATTCCATTAGGTTCTAAAGTATACGTAGAAGGTTACGGAGAGGCAATGGCACTA 46771 || || ||||||||||||| ||||| |||||||| || ||| ||||| || | Sbjct 160316 TCTGTTATCCCATTAGGTTCTACTGTATATGTAGAAGGATATGGAACAGCAATTGCTGGA 160375 Query 46772 GATACTGGTGGCGCAATCAAAGGTAACCGCATCGATGTATTAATGCCAAA--CAACAAAG 46829 ||||||||| | ||||| ||||| | ||| ||| ||||||||||||| || | | Sbjct 160376 GATACTGGTAGTGCAATAAAAGGGCATATCATTGATCTATTAATGCCAAATTCAGCTCA- 160434 Query 46830 TATCGAATGACTGGGGACGAAAAACAGTTAACGTTACAATCTTAAACTA 46878 | | ||||||||||| ||| ||||||||| |||| ||| |||||||| Sbjct 160435 -AGCTAATGACTGGGGTAGAAGAACAGTTAAAGTTAAAATTTTAAACTA 160482 >seq8 Length=318055 Score = 156 bits (172), Expect = 4e-33 Identities = 218/300 (73%), Gaps = 8/300 (3%) Strand=Plus/Minus Query 46583 ACAGTGGTCGCAACAGCTTATACAGCAGACCC-AGCAGAGAATGGTGGTACATACGGTGG 46641 ||||| || || ||||| |||||||| |||| ||| || || ||||| ||||| || || Sbjct 28544 ACAGTTGTAGCTACAGCATATACAGCTCACCCGAGC-GAAAACGGTGGCACATATGGCGG 28486 Query 46642 AGTAGTTAAAACAGCAACAGGATTTAATTTAACAGCAAATCCTAGCGCAAAAGTAATCGC 46701 || ||| |||| || | ||||||| || ||||| | ||| | ||||| Sbjct 28485 CCGTGTATTAACTGCAATGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGC 28426 Query 46702 AGTTGACCCACGAGTAATTCCATTAGGTTCTAAAGTATACGTAGAAGGTTACGGAGAGGC 46761 |||||||| |||||| |||||||| |||||||||| ||||||||||||||||| || Sbjct 28425 TGTTGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGC 28366 Query 46762 AATGGCACTAGATACTGGTGGCGCAATCAAAGGTAACCGCATCGATGTATTAAT---GCC 46818 || || |||||||||||| ||||| ||||||||||| || ||| | ||| | | Sbjct 28365 TATCGCTGGAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGATATCTTACTTGGATC 28306 Query 46819 AAACAACAAAGTATCGAATGACTGGGGACGAAAAACAGTTAACGTTACAATCTTAAACTA 46878 | | | | | || || | |||||||| ||||| ||||| || | ||| ||||| || Sbjct 28305 AGATAGCGCTG-CTCAAA--AATGGGGACGCAAAACTGTTAAAGTGAAAATTTTAAAATA 28249 >seq7 Length=350003 Score = 150 bits (166), Expect = 2e-31 Identities = 217/300 (72%), Gaps = 12/300 (4%) Strand=Plus/Plus Query 46579 AATTA-CAGTGGTCGCAACAGCTTATACAGCAGACCCAGCAGAGAATGGTGGTACATACG 46637 ||||| | || || || ||||| ||||| || || ||| || |||||| ||||| | Sbjct 228987 AATTAACGGTAGTAGCGACAGCGTATACTGCTGATCCAAGTGAAAATGGT---ACATATG 229043 Query 46638 GTGGAGTAGTTAAAACAGCAACAGGATTTAATTTAACAGCAAATCCTAGCGCAAAAGTAA 46697 ||||| ||| ||| || | || | ||||||| |||||||| | | | | | Sbjct 229044 GTGGACGCGTTTTAACTGCGATGGGGCATGATTTAACGGCAAATCCGAATATGAGAATTA 229103 Query 46698 TCGCAGTTGACCCACGAGTAATTCCATTAGGTTCTAAAGTATACGTAGAAGGTTACGGAG 46757 ||||||||||||| |||||| |||||||| |||||||||| |||||||| || |||| Sbjct 229104 TCGCAGTTGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAG 229163 Query 46758 AGGCAATGGCACTAGATACTGGTGGCGCAATCAAAGGTAACCGCATCGATGTATTAATG- 46816 | || || || |||||||| | ||||| |||||||| || || ||||| |||||| Sbjct 229164 AAGCGATCGCTGGTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGTTTTAATGG 229223 Query 46817 --CCAAACAACAAAG-TATCGAATGACTGGGGACGAAAAACAGTTAACGTTACAATCTTA 46873 |||| | |||| ||| |||| |||||| || |||| ||||| || | ||| ||| Sbjct 229224 GTTCAAAAAGTAAAGCTAT-GAAT---TGGGGAAGACAAACTGTTAAAGTGAAAATTTTA 229279 >seq361 Length=20807 Score = 120 bits (132), Expect = 3e-22 Identities = 168/235 (71%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 46579 AATTACAGTGGTCGCAACAGCTTATACAGCAGACCCAGCAGAGAATGGTGGTACATACGG 46638 ||||||||| | || || || ||||||||||| || ||||||||| | || || Sbjct 1057 AATTACAGTAGAAGCGACGGCATATACAGCAGATCCGAGTGAGAATGGTT---CGTATGG 1113 Query 46639 TGGAGTAGTTAAAACAGCAACAGGATTTAATTTAACAGCAAATCCTAGCGCAAAAGTAAT 46698 ||| || ||| |||| || | |||||||||||||||| | |||||||| Sbjct 1114 TGGTCGTGTATTAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAAT 1173 Query 46699 CGCAGTTGACCCACGAGTAATTCCATTAGGTTCTAAAGTATACGTAGAAGGTTACGGAGA 46758 || ||||| || ||||||||| | || || ||||||| |||||||| || ||||| Sbjct 1174 TGCTGTTGATCCGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGA 1233 Query 46759 GGCAATGGCACTAGATACTGGTGGCGCAATCAAAGGTAACCGCATCGATGTATTA 46813 || || || ||| || ||||| || || ||||| || || || ||||||||| Sbjct 1234 AGCGATTGCTGGAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGTATTA 1288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510736435635200