Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_024211.1 Length=158750 Score E Sequences producing significant alignments: (Bits) Value seq7 147 2e-30 seq361 132 5e-26 seq6 131 2e-25 seq16 129 6e-25 seq8 122 9e-23 seq5 104 2e-17 >seq7 Length=350003 Score = 147 bits (162), Expect = 2e-30 Identities = 205/285 (72%), Gaps = 7/285 (2%) Strand=Plus/Plus Query 47275 AGCAACAGCATATACTGCCGACCCAGCAGAGAATGGCGGTACGTACGGTGGACGAGTACT 47334 ||| ||||| |||||||| || ||| || ||||| ||| || |||||||| || | Sbjct 229000 AGCGACAGCGTATACTGCTGATCCAAGTGAAAATGG---TACATATGGTGGACGCGTTTT 229056 Query 47335 AACAGCTACAGGGTTTGACTTAACAGCAAATCC--ATCAGCTAAAGTTATCGCAGTTGAC 47392 ||| || | ||| ||| ||||| |||||||| || | || |||||||||||||| Sbjct 229057 AACTGCGATGGGGCATGATTTAACGGCAAATCCGAATATGAGAA--TTATCGCAGTTGAC 229114 Query 47393 CCACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCA 47452 || |||||| |||||||| |||||||| |||||||| || ||| ||| || || Sbjct 229115 CCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAGAAGCGATCGCT 229174 Query 47453 TCAGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCT 47512 |||||||| | || || ||||| ||||| || ||||| |||||| ||| ||| | Sbjct 229175 GGTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGTTTTAATGGGTTCAAAAAGT 229234 Query 47513 CAGTCTAGTAACTGGGGTGTACGAACAGTAAAAGTAACAATCTTA 47557 | ||| || ||||| || ||| || ||||| | ||| ||| Sbjct 229235 AAAGCTATGAATTGGGGAAGACAAACTGTTAAAGTGAAAATTTTA 229279 >seq361 Length=20807 Score = 132 bits (146), Expect = 5e-26 Identities = 164/224 (73%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 47274 AAGCAACAGCATATACTGCCGACCCAGCAGAGAATGGCGGTACGTACGGTGGACGAGTAC 47333 |||| || |||||||| || || || |||||||| | |||| ||||| || ||| Sbjct 1068 AAGCGACGGCATATACAGCAGATCCGAGTGAGAATGG---TTCGTATGGTGGTCGTGTAT 1124 Query 47334 TAACAGCTACAGGGTTTGACTTAACAGCAAATCCATCAGCTAAAGTTATCGCAGTTGACC 47393 |||| || | ||| ||| ||||||||||||||| ||||| || || ||||| | Sbjct 1125 TAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAATTGCTGTTGATC 1184 Query 47394 CACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCAT 47453 | ||||||||| | || || ||||| ||||||||||| ||| ||| ||||| Sbjct 1185 CGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGAAGCGATTGCTG 1244 Query 47454 CAGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTA 47497 ||| || ||||| || || ||||||||||| || ||||||||| Sbjct 1245 GAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGTATTA 1288 >seq6 Length=382643 Score = 131 bits (144), Expect = 2e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 47352 ACTTAACAGCAAATCCATCAGCTAAAGTTATCGCAGTTGACCCACGAGTAATTCCATTAG 47411 |||||||||| |||||| ||| | || |||||||| ||| | || |||||||||| Sbjct 339029 ACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTTGATCCAAGTGTCATTCCATTAG 339088 Query 47412 GCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCATCAGATACTGGTGGAGCTA 47471 | || ||||| || ||||| |||||| |||||| || |||||||||||||||| Sbjct 339089 GTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATCGCTGGTGATACTGGTGGAGCTA 339148 Query 47472 TCAAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCTCAGTCTAGTAACTGGGG-T 47530 | ||||| ||| |||||| || |||||||| |||| | || |||| |||||| Sbjct 339149 TTAAAGGTAATAAAATCGACGTTTTAATGCCAGATAAAGGTTCATCAAGTAGCTGGGGAC 339208 Query 47531 GTACGAACAGTAAAAGTAACAATCTTAAACTAGT 47564 ||| |||||| | ||| | | | |||||||||| Sbjct 339209 GTA-AAACAGTTACAGTTAAAGTATTAAACTAGT 339241 >seq16 Length=199848 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 47354 TTAACAGCAAATCCATCAGCTAAAGTTATCGCAGTTGACCCACGAGTAATTCCATTAGGC 47413 ||||| ||||||||| ||| | || || || || ||| || || |||||||| Sbjct 160274 TTAACTGCAAATCCAAACATGAAATTAATTGCTGTAGATCCATCTGTTATCCCATTAGGT 160333 Query 47414 TCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCATCAGATACTGGTGGAGCTATC 47473 |||| || ||||||||||||| |||||||||||||| |||||||||| | || || Sbjct 160334 TCTACTGTATATGTAGAAGGATATGGAACAGCAATTGCTGGAGATACTGGTAGTGCAATA 160393 Query 47474 AAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCTCAGTCTAGTAACTGGGGTGTA 47533 ||||| || || ||| |||||||||| | | |||| ||| | |||||||| | Sbjct 160394 AAAGGGCATATCATTGATCTATTAATGCCAAATTCAGCTCAAGCTAATGACTGGGGTAGA 160453 Query 47534 CGAACAGTAAAAGTAACAATCTTAAACTA 47562 ||||||| ||||| | ||| |||||||| Sbjct 160454 AGAACAGTTAAAGTTAAAATTTTAAACTA 160482 >seq8 Length=318055 Score = 122 bits (134), Expect = 9e-23 Identities = 163/224 (73%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 47275 AGCAACAGCATATACTGCCGACCC-AGCAGAGAATGGCGGTACGTACGGTGGACGAGTAC 47333 ||| ||||||||||| || |||| ||| || || || || || || || || || ||| Sbjct 28536 AGCTACAGCATATACAGCTCACCCGAGC-GAAAACGGTGGCACATATGGCGGCCGTGTAT 28478 Query 47334 TAACAGCTACAGGGTTTGACTTAACAGCAAATCCATCAGCTAAAGTTATCGCAGTTGACC 47393 |||| || | || ||| ||||| || |||||| ||| | ||||| ||||||| Sbjct 28477 TAACTGCAATGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGCTGTTGACC 28418 Query 47394 CACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCAT 47453 | |||||| |||||||| |||||||| |||||||| |||||| ||| || || Sbjct 28417 CGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGCTATCGCTG 28358 Query 47454 CAGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTA 47497 |||||||||||| || || ||||| || || || ||| | ||| Sbjct 28357 GAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGATATCTTA 28314 >seq5 Length=406804 Score = 104 bits (114), Expect = 2e-17 Identities = 283/426 (66%), Gaps = 8/426 (2%) Strand=Plus/Plus Query 33635 TTTATCTTGATGGTAAAAATAAATATTACAACACATGGAATAAGACAGCTATAAAAGACG 33694 ||||| | || ||||||||||||||||| ||||| ||||| || ||| |||||||| Sbjct 286186 TTTATTTAGACGGTAAAAATAAATATTATAACACTTGGAACAAAACACAAATAAAAGATA 286245 Query 33695 GTGTCGTTCTCAACTGGACAGGTTCGCATAAAGGTGTGGGTATCCGTTTCTACTCTGGAG 33754 || |||| ||||| | || |||||||| || || ||| ||||||| | Sbjct 286246 TAAATATTATCAATTGGACGGAAACGAATAAAGGTACCGGAATTTCTTTATACTCTGCTG 286305 Query 33755 GAACCGACCACGAGATTTCATTCGTAGATACATCG--AATATCAAACTAGTAGGTTTAAG 33812 ||| || | || ||||| || || || ||| ||||| ||| | ||||| | | Sbjct 286306 GAAAAGAAAATGAAATTTCGTTTGT--TAACTTCGAAAATATTAAAGTTGTAGGAAT-GG 286362 Query 33813 AAAAGGTATTG-AGCTAGAAGCTAAAGCTCC-AGCTACTGGAATGGCTTGGGTGAATGCA 33870 ||| | | || | ||| ||| ||| || ||| || ||| |||||| | ||||| Sbjct 286363 AAACTGGACTGAAATTAGTAGCGAAAAAACCGAGC-ACCGGACAAGCTTGGATAAATGCC 286421 Query 33871 AATCGTTTCGATAAGATATCAATTGAAGATTGCGTAGAGATGATTACGATTGATAGCAGC 33930 |||||||| || | || | ||||| || ||| | |||||| || ||||| Sbjct 286422 AATCGTTTTATGAACTTTTCTTTAGAAGACTGTGTAAATATGATTTATATGGATAGTCAA 286481 Query 33931 GAGACAATCCCGAATGAATGTAGTGGTAATACTTTCTCCAATCTTCAACTACAGCCATCT 33990 | || | || |||||| |||||| ||| || | || |||||| ||||||| || Sbjct 286482 GTAACTACGCCAAATGAAATTAGTGGGAATCAATTTACAAACCTTCAAATACAGCCTTCA 286541 Query 33991 ACCGCAACTACAAAAGTCTTAAAAGTAAGTGGACAGCATAACCGATTCGACGGTATGCTC 34050 | ||| | || | || | |||||||| || ||||| ||| | || ||| | Sbjct 286542 AATAAAACAAAAAGCATTATACAGGTAAGTGGTCAACATAATGAATTTCATGGGATGGTG 286601 Query 34051 TGGGAT 34056 |||||| Sbjct 286602 TGGGAT 286607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507837432962000