Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_024213.1 Length=158100 Score E Sequences producing significant alignments: (Bits) Value seq7 159 4e-34 seq16 141 9e-29 seq6 140 3e-28 seq8 136 4e-27 seq361 127 2e-24 seq5 109 6e-19 >seq7 Length=350003 Score = 159 bits (176), Expect = 4e-34 Identities = 208/285 (73%), Gaps = 7/285 (2%) Strand=Plus/Plus Query 46248 AGCAACAGCTTATACTGCTGACCCATCCGAGAATGGCGGAACATATGGTGGACGAGTATT 46307 ||| ||||| ||||||||||| ||| || ||||| |||||||||||||| || || Sbjct 229000 AGCGACAGCGTATACTGCTGATCCAAGTGAAAATGGT---ACATATGGTGGACGCGTTTT 229056 Query 46308 AACAGCTACAGGGTTTGACTTAACAGCAAATCC--ATCGGCTAAAGTTATCGCAGTTGAC 46365 ||| || | ||| ||| ||||| |||||||| || | || |||||||||||||| Sbjct 229057 AACTGCGATGGGGCATGATTTAACGGCAAATCCGAATATGAGAA--TTATCGCAGTTGAC 229114 Query 46366 CCACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCA 46425 || |||||| |||||||| |||||||| |||||||| || ||| ||| || || Sbjct 229115 CCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAGAAGCGATCGCT 229174 Query 46426 TCAGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCT 46485 |||||||| | || || ||||| ||||| || ||||| |||||| ||| ||| | Sbjct 229175 GGTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGTTTTAATGGGTTCAAAAAGT 229234 Query 46486 CAGTCTAGTAACTGGGGCGTACGAACAGTAAAAGTAACAATCTTA 46530 | ||| || ||||| || ||| || ||||| | ||| ||| Sbjct 229235 AAAGCTATGAATTGGGGAAGACAAACTGTTAAAGTGAAAATTTTA 229279 >seq16 Length=199848 Score = 141 bits (156), Expect = 9e-29 Identities = 240/343 (70%), Gaps = 10/343 (3%) Strand=Plus/Plus Query 46201 GAGTCTTACACAGAGACTACACCA---CAAGGT--AAAACAATCGTA-GTGAAAGCAACA 46254 |||||| | | || || | |||| |||||| |||| ||| || || | |||||| Sbjct 160142 GAGTCTAAGCCTGATACGAAACCAACTCAAGGTGGAAAAGAATTTTACGTAACAGCAACC 160201 Query 46255 GCTTATACTGCTGACCCATCCGAGAATGGCGGAACATATGGTGGACGAGTATTAAC--AG 46312 |||||||| ||||||||||| || || ||| | | |||| | ||| | | || Sbjct 160202 GCTTATACAGCTGACCCATCTGAAAACGGCTATAAACCGGGTGAAACTGTAAAATCTAAG 160261 Query 46313 CTACAGGGTTTGACTTAACAGCAAATCCATCGGCTAAAGTTATCGCAGTTGACCCACGAG 46372 || || | | ||||| ||||||||| ||| | || || || || ||| | Sbjct 160262 TTA--GGACATAATTTAACTGCAAATCCAAACATGAAATTAATTGCTGTAGATCCATCTG 160319 Query 46373 TAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCATCAGATA 46432 | || |||||||| |||| || ||||||||||||| |||||||||||||| ||||| Sbjct 160320 TTATCCCATTAGGTTCTACTGTATATGTAGAAGGATATGGAACAGCAATTGCTGGAGATA 160379 Query 46433 CTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCTCAGTCTA 46492 ||||| | || || ||||| || || ||| |||||||||| | | |||| ||| Sbjct 160380 CTGGTAGTGCAATAAAAGGGCATATCATTGATCTATTAATGCCAAATTCAGCTCAAGCTA 160439 Query 46493 GTAACTGGGGCGTACGAACAGTAAAAGTAACAATCTTAAACTA 46535 | ||||||| | ||||||| ||||| | ||| |||||||| Sbjct 160440 ATGACTGGGGTAGAAGAACAGTTAAAGTTAAAATTTTAAACTA 160482 >seq6 Length=382643 Score = 140 bits (154), Expect = 3e-28 Identities = 207/291 (71%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 46248 AGCAACAGCTTATACTGCTGACCCATCCGAGAATGGCGGAACATATGGTGGACGAGTATT 46307 |||||||||||| || || || ||| || ||||| | | || | | |||| Sbjct 338952 AGCAACAGCTTACACAGCAGATCCACTTGAAAATGGTTATAAAGCAGGCGACCAAGTAAA 339011 Query 46308 AACAGCTACAGGGTTTGACTTAACAGCAAATCCATCGGCTAAAGTTATCGCAGTTGACCC 46367 | ||||| ||| |||||||||| |||||| ||| | || |||||||| || Sbjct 339012 ATCAGCTTTAGGCCACAACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTTGATCC 339071 Query 46368 ACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCATC 46427 | | || ||||||||||| || ||||| || ||||| |||||| |||||| || Sbjct 339072 AAGTGTCATTCCATTAGGTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATCGCTGG 339131 Query 46428 AGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCTCA 46487 ||||||||||||||||| ||||| ||| |||||| || |||||||| |||| | Sbjct 339132 TGATACTGGTGGAGCTATTAAAGGTAATAAAATCGACGTTTTAATGCCAGATAAAGGTTC 339191 Query 46488 GTCTAGTAACTGGGG-CGTACGAACAGTAAAAGTAACAATCTTAAACTAGT 46537 || |||| |||||| |||| |||||| | ||| | | | |||||||||| Sbjct 339192 ATCAAGTAGCTGGGGACGTA-AAACAGTTACAGTTAAAGTATTAAACTAGT 339241 >seq8 Length=318055 Score = 136 bits (150), Expect = 4e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 46248 AGCAACAGCTTATACTGCTGACCCATCCGAGAATGGCGGAACATATGGTGGACGAGTATT 46307 ||| ||||| ||||| ||| |||| ||| || || || |||||||| || || ||||| Sbjct 28536 AGCTACAGCATATACAGCTCACCCGAGCGAAAACGGTGGCACATATGGCGGCCGTGTATT 28477 Query 46308 AACAGCTACAGGGTTTGACTTAACAGCAAATCCATCGGCTAAAGTTATCGCAGTTGACCC 46367 ||| || | || ||| ||||| || |||||| ||| | ||||| |||||||| Sbjct 28476 AACTGCAATGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGCTGTTGACCC 28417 Query 46368 ACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCATC 46427 |||||| |||||||| |||||||| |||||||| |||||| ||| || || Sbjct 28416 GAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGCTATCGCTGG 28357 Query 46428 AGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTA 46470 |||||||||||| || || ||||| || || || ||| | ||| Sbjct 28356 AGATACTGGTGGTGCAATTAAAGGTAACCGTATTGATATCTTA 28314 >seq361 Length=20807 Score = 127 bits (140), Expect = 2e-24 Identities = 163/224 (73%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 46247 AAGCAACAGCTTATACTGCTGACCCATCCGAGAATGGCGGAACATATGGTGGACGAGTAT 46306 |||| || || ||||| || || || |||||||| | |||||||| || |||| Sbjct 1068 AAGCGACGGCATATACAGCAGATCCGAGTGAGAATGGTT---CGTATGGTGGTCGTGTAT 1124 Query 46307 TAACAGCTACAGGGTTTGACTTAACAGCAAATCCATCGGCTAAAGTTATCGCAGTTGACC 46366 |||| || | ||| ||| ||||||||||||||| ||||| || || ||||| | Sbjct 1125 TAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAATTGCTGTTGATC 1184 Query 46367 CACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCAT 46426 | ||||||||| | || || ||||| ||||||||||| ||| ||| ||||| Sbjct 1185 CGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGAAGCGATTGCTG 1244 Query 46427 CAGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTA 46470 ||| || ||||| || || ||||||||||| || ||||||||| Sbjct 1245 GAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGTATTA 1288 >seq5 Length=406804 Score = 109 bits (120), Expect = 6e-19 Identities = 284/426 (67%), Gaps = 8/426 (2%) Strand=Plus/Plus Query 32465 TTTACCTTGATGGTAAAAATAAATATTACAATACATGGAATAAGACATCTATAAAAGATG 32524 |||| | || ||||||||||||||||| || || ||||| || ||| ||||||||| Sbjct 286186 TTTATTTAGACGGTAAAAATAAATATTATAACACTTGGAACAAAACACAAATAAAAGATA 286245 Query 32525 GTGTCGTTCTCAACTGGACAGGTTCTCATAAAGGTGTTGGTATCCGATTCTACTCTGGAG 32584 || |||| ||||| | | |||||||| || || || ||||||| | Sbjct 286246 TAAATATTATCAATTGGACGGAAACGAATAAAGGTACCGGAATTTCTTTATACTCTGCTG 286305 Query 32585 GAACTGACCATGAGATTTCATTCGTAGATACATC--AAACATCAAACTAGTAGGTTTAAG 32642 ||| || |||| ||||| || || | | || ||| || ||| | ||||| | | Sbjct 286306 GAAAAGAAAATGAAATTTCGTTTGTTAA--CTTCGAAAATATTAAAGTTGTAGGAATG-G 286362 Query 32643 AAAAGGTATTGAACT-AGAAGCTAAAGCTCC-AGCTACCGGAATGGCTTGGGTGAACGCA 32700 ||| | | |||| | || ||| ||| || ||| |||||| |||||| | || || Sbjct 286363 AAACTGGACTGAAATTAGTAGCGAAAAAACCGAGC-ACCGGACAAGCTTGGATAAATGCC 286421 Query 32701 AATCGTTTCGATAAGATATCAATTGAAGACTGTGTAGAAATGATTACGATTGACAGCAGT 32760 |||||||| || | || | |||||||||||| | |||||| || || || Sbjct 286422 AATCGTTTTATGAACTTTTCTTTAGAAGACTGTGTAAATATGATTTATATGGATAGTCAA 286481 Query 32761 GAGACAATCCCGAACGAATGTAGTGGTAATACTTTCTCCAATCTTCAACTACAGCCATCT 32820 | || | || || ||| |||||| ||| || | || |||||| ||||||| || Sbjct 286482 GTAACTACGCCAAATGAAATTAGTGGGAATCAATTTACAAACCTTCAAATACAGCCTTCA 286541 Query 32821 ACCGCAACAACAAAAGTTTTAAAAGTAAGTGGACAGCATAACCGATTCGATGGTATGCTT 32880 | ||||| || || || | |||||||| || ||||| ||| |||| ||| | Sbjct 286542 AATAAAACAAAAAGCATTATACAGGTAAGTGGTCAACATAATGAATTTCATGGGATGGTG 286601 Query 32881 TGGGAT 32886 |||||| Sbjct 286602 TGGGAT 286607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505757574532000