Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_024216.1 Length=160541 Score E Sequences producing significant alignments: (Bits) Value seq6 183 3e-41 seq7 152 5e-32 seq8 150 2e-31 seq361 134 1e-26 seq16 132 5e-26 >seq6 Length=382643 Score = 183 bits (202), Expect = 3e-41 Identities = 220/297 (74%), Gaps = 4/297 (1%) Strand=Plus/Plus Query 46852 GTGGTCGCAACAGCTTATACAGCAGACCCAGCAGAGAATGGTGGTACATACGGTGGAGTA 46911 || || ||||||||||| |||||||| ||| || |||||| || | || | | Sbjct 338947 GTTGTAGCAACAGCTTACACAGCAGATCCACTTGAAAATGGTTATAAAGCAGGCGACCAA 339006 Query 46912 GTTAAAACAGCAACAGGATTCAATTTAACAGCAAATCCTAGCGCAAAAGTAATCGCAGTT 46971 || ||| |||| ||| ||| |||||||| ||||| | | ||| |||| |||||| Sbjct 339007 GTAAAATCAGCTTTAGGCCACAACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTT 339066 Query 46972 GACCCACGAGTAATTCCATTAGGTTCTAAAGTATACGTAGAAGGTTACGGAGAGGCGATG 47031 || ||| | || |||||||||||||| ||||||| || ||||||||||||| || || Sbjct 339067 GATCCAAGTGTCATTCCATTAGGTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATC 339126 Query 47032 GCACTAGATACAGGTGGTTCTATTAAAGGTAATCGTATCGATGTATTAATGCCTAATAAC 47091 || ||||| ||||| |||||||||||||| ||||| || |||||||| ||| Sbjct 339127 GCTGGTGATACTGGTGGAGCTATTAAAGGTAATAAAATCGACGTTTTAATGCCAGATA-- 339184 Query 47092 AAAGT--ATCGAATGACTGGGGACGAAAAACAGTTAACGTTACAATCTTAAACTAGT 47146 || || ||| | | ||||||||| |||||||||| |||| | | |||||||||| Sbjct 339185 AAGGTTCATCAAGTAGCTGGGGACGTAAAACAGTTACAGTTAAAGTATTAAACTAGT 339241 >seq7 Length=350003 Score = 152 bits (168), Expect = 5e-32 Identities = 216/298 (72%), Gaps = 8/298 (3%) Strand=Plus/Plus Query 46845 AATTA-CAGTGGTCGCAACAGCTTATACAGCAGACCCAGCAGAGAATGGTGGTACATACG 46903 ||||| | || || || ||||| ||||| || || ||| || |||||| ||||| | Sbjct 228987 AATTAACGGTAGTAGCGACAGCGTATACTGCTGATCCAAGTGAAAATGGT---ACATATG 229043 Query 46904 GTGGAGTAGTTAAAACAGCAACAGGATTCAATTTAACAGCAAATCCTAGCGCAAAAGTAA 46963 ||||| ||| ||| || | || ||||||| |||||||| | | | | | Sbjct 229044 GTGGACGCGTTTTAACTGCGATGGGGCATGATTTAACGGCAAATCCGAATATGAGAATTA 229103 Query 46964 TCGCAGTTGACCCACGAGTAATTCCATTAGGTTCTAAAGTATACGTAGAAGGTTACGGAG 47023 ||||||||||||| |||||| |||||||| |||||||||| |||||||| || |||| Sbjct 229104 TCGCAGTTGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAG 229163 Query 47024 AGGCGATGGCACTAGATACAGGTGGTTCTATTAAAGGTAATCGTATCGATGTATTAATGC 47083 | ||||| || ||||| || || | ||||||||||||||||| ||||| |||||| Sbjct 229164 AAGCGATCGCTGGTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGTTTTAATGG 229223 Query 47084 CTAATAACAAAGTATCG-AATG-ACTGGGGACGAAAAACAGTTAACGTTACAATCTTA 47139 | | | |||||| | ||| | |||||| || |||| ||||| || | ||| ||| Sbjct 229224 GT--TCAAAAAGTAAAGCTATGAATTGGGGAAGACAAACTGTTAAAGTGAAAATTTTA 229279 Score = 84.2 bits (92), Expect = 2e-11 Identities = 208/307 (68%), Gaps = 9/307 (3%) Strand=Plus/Minus Query 25544 ATCACATTTACCGATACCTGCGATGTTACCGTACTCTGTCCATTGCCATAAATCACAAGC 25603 |||||| || |||||||| || | || || ||||| ||||||| | |||||| | Sbjct 349240 ATCACACTTGCCGATACCAGCCACATTCCCTGTTTCTGTGTATTGCCAAATATCACATGA 349181 Query 25604 GAACGCTGGTTTATTACC---GTAACGAGGAATCCAAGTGAAGTCACAGTTTACATCTTT 25660 |||| ||||| ||||| ||||||||||||||| || ||| | || | || || Sbjct 349180 ATACGCCGGTTTGTTACCACCGTAACGAGGAATCCATACAAAATCAGAATTGAAAT-TTG 349122 Query 25661 ACCTCCGAACTCTTG-GTACTTGTGATGTCCGATGTATAAACCAACTTTCTTTGCACCTA 25719 | | | || | | ||| | ||||| | || ||||||||| | ||||| || |||| Sbjct 349121 CCATTCCAAATGGAGCATACATATGATGAGCAATATATAAACCAGCCTTCTTAGCTCCTA 349062 Query 25720 ACTCT-TTTAATCGGTCAATAAACACTTGAATACATTCTTTCATATTCGGAGCTGTAGAA 25778 | ||| |||| |||||||| |||| || || |||||| ||| Sbjct 349061 A-TCTGCGTAATTCATCAATAAAAGCTTGTGCACCCGCTCTCATATCGTTCATTGTTCTT 349003 Query 25779 ACCTCTGCGTCACATACCCAAACAGTTGCATCCTTGTCTCCGTAATTCCAGAAGAACTC- 25837 || ||| ||||| ||||||||| ||||||| || || || ||||| ||| ||| Sbjct 349002 ACTTCTACGTCAGCTACCCAAACTGTTGCATTTTTATCACCACGGTTCCAAAAG-TCTCT 348944 Query 25838 TGCTTCT 25844 ||||||| Sbjct 348943 TGCTTCT 348937 >seq8 Length=318055 Score = 150 bits (166), Expect = 2e-31 Identities = 219/302 (73%), Gaps = 12/302 (4%) Strand=Plus/Minus Query 46849 ACAGTGGTCGCAACAGCTTATACAGCAGACCC-AGCAGAGAATGGTGGTACATACGGTGG 46907 ||||| || || ||||| |||||||| |||| ||| || || ||||| ||||| || || Sbjct 28544 ACAGTTGTAGCTACAGCATATACAGCTCACCCGAGC-GAAAACGGTGGCACATATGGCGG 28486 Query 46908 AGTAGTTAAAACAGCAACAGGATTCA--ATTTAACAGCAAATCCTAGCGCAAAAGTAATC 46965 || ||| |||| || ||| ||||||| || ||||| | ||| | ||| Sbjct 28485 CCGTGTATTAACTGCAATGGG--TCATGATTTAACTGCGAATCCAAATATGAAAATGATC 28428 Query 46966 GCAGTTGACCCACGAGTAATTCCATTAGGTTCTAAAGTATACGTAGAAGGTTACGGAGAG 47025 || |||||||| |||||| |||||||| |||||||||| ||||||||||||||||| Sbjct 28427 GCTGTTGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAA 28368 Query 47026 GCGATGGCACTAGATACAGGTGGTTCTATTAAAGGTAATCGTATCGATGTATTAAT---G 47082 || || || |||||| |||||| | ||||||||||| ||||| ||| | ||| | Sbjct 28367 GCTATCGCTGGAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGATATCTTACTTGGA 28308 Query 47083 CCTAATAACAAAGTATCGAATGACTGGGGACGAAAAACAGTTAACGTTACAATCTTAAAC 47142 | ||| | | || || | |||||||| ||||| ||||| || | ||| ||||| Sbjct 28307 TCAGATAGCGCTG-CTCAAA--AATGGGGACGCAAAACTGTTAAAGTGAAAATTTTAAAA 28251 Query 47143 TA 47144 || Sbjct 28250 TA 28249 >seq361 Length=20807 Score = 134 bits (148), Expect = 1e-26 Identities = 171/235 (73%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 46845 AATTACAGTGGTCGCAACAGCTTATACAGCAGACCCAGCAGAGAATGGTGGTACATACGG 46904 ||||||||| | || || || ||||||||||| || ||||||||| | || || Sbjct 1057 AATTACAGTAGAAGCGACGGCATATACAGCAGATCCGAGTGAGAATGGTT---CGTATGG 1113 Query 46905 TGGAGTAGTTAAAACAGCAACAGGATTCAATTTAACAGCAAATCCTAGCGCAAAAGTAAT 46964 ||| || ||| |||| || |||||||||||||||| | |||||||| Sbjct 1114 TGGTCGTGTATTAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAAT 1173 Query 46965 CGCAGTTGACCCACGAGTAATTCCATTAGGTTCTAAAGTATACGTAGAAGGTTACGGAGA 47024 || ||||| || ||||||||| | || || ||||||| |||||||| || ||||| Sbjct 1174 TGCTGTTGATCCGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGA 1233 Query 47025 GGCGATGGCACTAGATACAGGTGGTTCTATTAAAGGTAATCGTATCGATGTATTA 47079 ||||| || ||| || |||||| | |||||||| |||||||| ||||||||| Sbjct 1234 AGCGATTGCTGGAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGTATTA 1288 >seq16 Length=199848 Score = 132 bits (146), Expect = 5e-26 Identities = 204/289 (71%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 46858 GCAACAGCTTATACAGCAGACCCAGCAGAGAATGGTGGTACATACGGTGGAGTAGTTAAA 46917 ||||| ||||||||||| |||||| | || || || || | |||| | || ||| Sbjct 160196 GCAACCGCTTATACAGCTGACCCATCTGAAAACGGCTATAAACCGGGTGAAACTGTAAAA 160255 Query 46918 ACAGCAACAGGATTCAATTTAACAGCAAATCCTAGCGCAAAAGTAATCGCAGTTGACCCA 46977 | |||| |||||||| |||||||| | | ||| |||| || || || ||| Sbjct 160256 TCTAAGTTAGGACATAATTTAACTGCAAATCCAAACATGAAATTAATTGCTGTAGATCCA 160315 Query 46978 CGAGTAATTCCATTAGGTTCTAAAGTATACGTAGAAGGTTACGGAGAGGCGATGGCACTA 47037 || || ||||||||||||| ||||| |||||||| || ||| || || || | Sbjct 160316 TCTGTTATCCCATTAGGTTCTACTGTATATGTAGAAGGATATGGAACAGCAATTGCTGGA 160375 Query 47038 GATACAGGTGGTTCTATTAAAGGTAATCGTATCGATGTATTAATGCCTAAT--AACAAAG 47095 ||||| ||| || | || ||||| || || ||| |||||||||| ||| | | | Sbjct 160376 GATACTGGTAGTGCAATAAAAGGGCATATCATTGATCTATTAATGCCAAATTCAGCTCA- 160434 Query 47096 TATCGAATGACTGGGGACGAAAAACAGTTAACGTTACAATCTTAAACTA 47144 | | ||||||||||| ||| ||||||||| |||| ||| |||||||| Sbjct 160435 -AGCTAATGACTGGGGTAGAAGAACAGTTAAAGTTAAAATTTTAAACTA 160482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513568242882200