Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_024387.1 Length=43767 Score E Sequences producing significant alignments: (Bits) Value seq5 134 4e-27 >seq5 Length=406804 Score = 134 bits (148), Expect = 4e-27 Identities = 273/398 (69%), Gaps = 23/398 (6%) Strand=Plus/Plus Query 19099 TAGAAGTTTAGCGAATGTAAATAAGTTAGCAGACAATACAAAAGCAGCGGCGAGAAAGTT 19158 ||||| | || ||| | ||||| ||||| || ||||| ||||| || || |||| Sbjct 271356 TAGAAATGTAAGTAATCTGAATAAATTAGCGGATAATACGAAAGCTGCAGCTTTTAAGTG 271415 Query 19159 GCTAGATTGGT-CTGAAAG--CAACGGGATTGAAGTGTTAATCTACGAAACAATTAGAAC 19215 | || || ||| | ||| || |||||||| ||||| || |||||||| | || Sbjct 271416 GT---ATCAGTACTGTATCGACAATGGAATTGAAGTATTAATTTATGAAACAATCCGTAC 271472 Query 19216 GAAAGAACAACAAGCCGCAAATGTTGCTAGCGGAGCGTCTCAAACAATGCGCTCTTATCA 19275 | || |||||| | | ||||| || ||||| || ||||| |||||||| ||||| Sbjct 271473 GGTCGAGCAACAACGTGAATATGTTCGTAAAGGAGCATCACAAACGATGCGCTCATATCA 271532 Query 19276 CCTGGCAGGACAAGCATTAGACTTTGTC---AT---GGCGAAAGGTAAAACGGTCGATTG 19329 | | | |||||| |||||||| ||||| || | |||| |||| | | ||||| Sbjct 271533 CTTAGTAGGACAGGCATTAGATTTTGTTCCAATTCAGTCGAATGGTACA---GAAGATTG 271589 Query 19330 GGGTGCTTATCGTTCAGA--CAAAGGCA--AGAAATTTGTGGCAAAGGCAAAATCTTTAG 19385 | || ||| | ||| | |||| || |||| || | || ||| | | Sbjct 271590 GAATGGCTATAATAAAGAACCGTGGGCATCAGCAATTCGTT----ATGCTAAACAAATTG 271645 Query 19386 GTTTTGAGTGGGGTGGTGATTGGTCTGGATTTGTAGACAATCCGCACCTTCAATTTAATT 19445 | ||||| ||||| ||||| ||| |||||||| || | ||||| | |||| ||| | Sbjct 271646 GCTTTGAATGGGGCGGTGACTGGAAAGGATTTGTGGATAGCCCGCATTTGCAATATAACT 271705 Query 19446 TTAAAGGTTATGGAACTGATACTTTTGGAAAAGGAGCT 19483 ||||| |||||||| ||||||||||||||||| ||| Sbjct 271706 ACAAAGGATATGGAACGGATACTTTTGGAAAAGGTGCT 271743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139923752032610