Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_024391.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq9 129 2e-25 >seq9 Length=252781 Score = 129 bits (142), Expect = 2e-25 Identities = 207/295 (70%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 6411 GTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCACGCCAAACGGCGTAAATGTAGGA 6470 || || || ||||| || ||||| || ||| | |||||| || || || |||| Sbjct 22227 GTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTCGCAGTAGCT 22286 Query 6471 ACATTCACATTAGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGAC 6530 || || || ||||| || || | |||| | ||| ||||| ||||||||||| ||| Sbjct 22287 ACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAGCAAGGTGAGCGTGAAGCTGAC 22346 Query 6531 TTTATAAACGTAGTAGTGTTCAAAAAACAAGCTGAAAATGTTAAAAAATACCTTTCTAAA 6590 ||||| || ||| | | |||||||| ||||| || ||| || || ||| Sbjct 22347 TTTATTAATTGTGTAATATGGCGTAAACAAGCAGAAAACGTAGCAAATTAT-TTGAAAAA 22405 Query 6591 GGGTCGCTG-GCAGGTGTAGACGGACGACTACAAACACGTAATTACGACAACAAAGTTGG 6649 ||| ||| ||||| ||||| ||||| || ||||| ||||||||||| ||| ||| Sbjct 22406 AGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGTAATTACGAGGGACAAGATGG 22465 Query 6650 GCAACGTGTATATGTTACAGAGGTAGTAGCGGACAGTGTTCAATTCTTAGAACCG 6704 |||||||||| || ||||| || | ||||| || || ||||| ||||| ||| Sbjct 22466 TAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTGCAATTTTTAGAGCCG 22520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134080929850270