Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_024788.1 Length=162816 Score E Sequences producing significant alignments: (Bits) Value seq7 165 8e-36 seq16 149 7e-31 seq8 149 7e-31 seq6 145 8e-30 seq361 136 4e-27 >seq7 Length=350003 Score = 165 bits (182), Expect = 8e-36 Identities = 205/280 (73%), Gaps = 3/280 (1%) Strand=Plus/Plus Query 44345 TAGCTACAGCGTACACAGCAGACCCAGCAGAGAATGGCGGTACATACGGTGGAGTAGTTA 44404 |||| |||||||| || || || ||| || ||||| |||||| |||||| ||| Sbjct 228999 TAGCGACAGCGTATACTGCTGATCCAAGTGAAAATGG---TACATATGGTGGACGCGTTT 229055 Query 44405 AAACAGCGATGGGTCATAATTTATCAGCAAACCCTAGCATGAAAATGGTTGCAGTTGACC 44464 ||| |||||||| ||| ||||| | ||||| || | |||| ||| | |||||||||| Sbjct 229056 TAACTGCGATGGGGCATGATTTAACGGCAAATCCGAATATGAGAATTATCGCAGTTGACC 229115 Query 44465 CTAGAGTAATTCCACTTGGCTCTCGTATCTATGTAGAAGGATATGGTGAAGCAATCGCGG 44524 | | |||||| ||| | || ||| | | |||||||| ||||| ||||| ||||| | Sbjct 229116 CGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAGAAGCGATCGCTG 229175 Query 44525 GAGATACTGGTGGAGCAATCAAAGGTAATCGAATCGATGTATTGATGCCATCTAAATCTC 44584 | |||||||| | ||||| ||||||||||| || ||||| || ||| || ||| | Sbjct 229176 GTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGTTTTAATGGGTTCAAAAAGTA 229235 Query 44585 AATCTAGCGACTGGGGAAGAAAAACAGTACAAGTTACAAT 44624 || ||| | ||||||||| |||| || |||| | ||| Sbjct 229236 AAGCTATGAATTGGGGAAGACAAACTGTTAAAGTGAAAAT 229275 >seq16 Length=199848 Score = 149 bits (164), Expect = 7e-31 Identities = 229/324 (71%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 44317 AAACCA---CAAGGT--AAAACAATTACA-GTTCTAGCTACAGCGTACACAGCAGACCCA 44370 |||||| |||||| |||| |||| | || ||| || || || ||||| |||||| Sbjct 160160 AAACCAACTCAAGGTGGAAAAGAATTTTACGTAACAGCAACCGCTTATACAGCTGACCCA 160219 Query 44371 GCAGAGAATGGCGGTACATACGGTGGAGTAGTTAAAACAGCGATGGGTCATAATTTATCA 44430 | || || ||| || | |||| | || ||| | | | || ||||||||| | Sbjct 160220 TCTGAAAACGGCTATAAACCGGGTGAAACTGTAAAATCTAAGTTAGGACATAATTTAACT 160279 Query 44431 GCAAACCCTAGCATGAAAATGGTTGCAGTTGACCCTAGAGTAATTCCACTTGGCTCTCGT 44490 ||||| || | ||||||| | |||| || || || || || ||| | || ||| | Sbjct 160280 GCAAATCCAAACATGAAATTAATTGCTGTAGATCCATCTGTTATCCCATTAGGTTCTACT 160339 Query 44491 ATCTATGTAGAAGGATATGGTGAAGCAATCGCGGGAGATACTGGTGGAGCAATCAAAGGT 44550 | ||||||||||||||||| |||||| || |||||||||||| | ||||| ||||| Sbjct 160340 GTATATGTAGAAGGATATGGAACAGCAATTGCTGGAGATACTGGTAGTGCAATAAAAGGG 160399 Query 44551 AATCGAATCGATGTATTGATGCCATCTAAATCTCAATCTAGCGACTGGGGAAGAAAAACA 44610 || || ||| |||| |||||| | | ||||| ||| |||||||| |||| |||| Sbjct 160400 CATATCATTGATCTATTAATGCCAAATTCAGCTCAAGCTAATGACTGGGGTAGAAGAACA 160459 Query 44611 GTACAAGTTACAATCCTAAATTAA 44634 || |||||| ||| |||| ||| Sbjct 160460 GTTAAAGTTAAAATTTTAAACTAA 160483 >seq8 Length=318055 Score = 149 bits (164), Expect = 7e-31 Identities = 170/226 (75%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 44338 ACAGTTCTAGCTACAGCGTACACAGCAGACCC-AGCAGAGAATGGCGGTACATACGGTGG 44396 |||||| |||||||||| || ||||| |||| ||| || || || || ||||| || || Sbjct 28544 ACAGTTGTAGCTACAGCATATACAGCTCACCCGAGC-GAAAACGGTGGCACATATGGCGG 28486 Query 44397 AGTAGTTAAAACAGCGATGGGTCATAATTTATCAGCAAACCCTAGCATGAAAATGGTTGC 44456 || ||| || ||||||||| ||||| | || || || | ||||||||| | || Sbjct 28485 CCGTGTATTAACTGCAATGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGC 28426 Query 44457 AGTTGACCCTAGAGTAATTCCACTTGGCTCTCGTATCTATGTAGAAGGATATGGTGAAGC 44516 |||||||| | |||||| ||| | || ||| | | |||||||| || || ||||| Sbjct 28425 TGTTGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGC 28366 Query 44517 AATCGCGGGAGATACTGGTGGAGCAATCAAAGGTAATCGAATCGAT 44562 ||||| |||||||||||||| ||||| |||||||| || || ||| Sbjct 28365 TATCGCTGGAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGAT 28320 >seq6 Length=382643 Score = 145 bits (160), Expect = 8e-30 Identities = 208/293 (71%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 44341 GTTCTAGCTACAGCGTACACAGCAGACCCAGCAGAGAATGGCGGTACATACGGTGGAGTA 44400 ||| |||| ||||| ||||||||||| ||| || ||||| || | || | | Sbjct 338947 GTTGTAGCAACAGCTTACACAGCAGATCCACTTGAAAATGGTTATAAAGCAGGCGACCAA 339006 Query 44401 GTTAAAACAGCGATGGGTCATAATTTATCAGCAAACCCTAGCATGAAAATGGTTGCAGTT 44460 || ||| |||| | || || || ||| |||| || || | ||||||| | |||||||| Sbjct 339007 GTAAAATCAGCTTTAGGCCACAACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTT 339066 Query 44461 GACCCTAGAGTAATTCCACTTGGCTCTCGTATCTATGTAGAAGGATATGGTGAAGCAATC 44520 || || || || |||||| | || || | | || ||||| || || | ||||||| Sbjct 339067 GATCCAAGTGTCATTCCATTAGGTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATC 339126 Query 44521 GCGGGAGATACTGGTGGAGCAATCAAAGGTAATCGAATCGATGTATTGATGCCATCTAAA 44580 || || |||||||||||||| || ||||||||| |||||| || || |||||| |||| Sbjct 339127 GCTGGTGATACTGGTGGAGCTATTAAAGGTAATAAAATCGACGTTTTAATGCCAGATAAA 339186 Query 44581 TCTCAATCTAGCGACTGGGGAAGAAAAACAGTACAAGTTACAATCCTAAATTA 44633 | ||| || ||||||| | |||||||| ||||| | | |||| || Sbjct 339187 GGTTCATCAAGTAGCTGGGGACGTAAAACAGTTACAGTTAAAGTATTAAACTA 339239 >seq361 Length=20807 Score = 136 bits (150), Expect = 4e-27 Identities = 171/234 (73%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 44334 AATTACAGTTCTAGCTACAGCGTACACAGCAGACCCAGCAGAGAATGGCGGTACATACGG 44393 ||||||||| ||| || || || |||||||| || |||||||| | | || || Sbjct 1057 AATTACAGTAGAAGCGACGGCATATACAGCAGATCCGAGTGAGAATGG---TTCGTATGG 1113 Query 44394 TGGAGTAGTTAAAACAGCGATGGGTCATAATTTATCAGCAAACCCTAGCATGAAAATGGT 44453 ||| || ||| || ||||| ||| ||||| ||||||| || | |||||| | | Sbjct 1114 TGGTCGTGTATTAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAAT 1173 Query 44454 TGCAGTTGACCCTAGAGTAATTCCACTTGGCTCTCGTATCTATGTAGAAGGATATGGTGA 44513 ||| ||||| || | ||||||||| ||||| || | | |||||||||||||| || Sbjct 1174 TGCTGTTGATCCGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGA 1233 Query 44514 AGCAATCGCGGGAGATACTGGTGGAGCAATCAAAGGTAATCGAATCGATGTATT 44567 ||| || || ||||| || ||||| || || ||||| ||||| || |||||||| Sbjct 1234 AGCGATTGCTGGAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGTATT 1287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520847747387200