Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_024792.1 Length=160281 Score E Sequences producing significant alignments: (Bits) Value seq361 100 3e-16 seq4 82.4 8e-11 >seq361 Length=20807 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 113579 TCAATGCGGTTTCCTTTAATTGCTCCGCCTGTGTCTGCTGCAATGGCTTGTCCATACCCT 113638 ||||| || ||||||||||| || || || |||||| | ||||| |||| |||||| ||| Sbjct 1281 TCAATACGATTTCCTTTAATCGCACCACCGGTGTCTCCAGCAATCGCTTCTCCATATCCT 1222 Query 113639 TCAACGTATACAGTAGAGCCAAGAGGAATTACATTAGGGTCTACGGCAATAACTTTTTGA 113698 || || |||| | || ||||| |||||||| || || || || ||||| ||||| | Sbjct 1221 TCTACCCATACTTTTGATCCAAGCGGAATTACTTTCGGATCAACAGCAATTACTTTCATA 1162 Query 113699 TTAGGGTTAGATCGTAAATC 113718 || || || | | |||||| Sbjct 1161 TTTGGATTTGCTGTTAAATC 1142 >seq4 Length=425142 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 146107 AGAAAGAAGACCGCACAGGAACTGGGACTTTGTCACTATTCGGACCTCAAGTAGAGTTTG 146166 ||||||||||||| ||||| || || ||| | || |||| ||| |||| | |||| Sbjct 259295 AGAAAGAAGACCGTACAGGGACAGGCACTGTATCTGTATTTGGATATCAAATGCGTTTTG 259354 Query 146167 ACCTTGCTGAAGGATTTCCTCTCTTAACTAGGAAGAAAGTACCTTTTAGGCTAGTAGCTG 146226 | || | |||| |||||| | ||||| | |||| |||||| ||| | || ||||| Sbjct 259355 ATCTAAGTAAAGGTTTTCCTTTATTAACAACAAAGAGAGTACCGTTTCGCCTTGTAGCAA 259414 Query 146227 AAGAGTTGTTTTGGTTCTTGAACGGAGATACAGAT 146261 || || ||||||| |||| || |||||| || Sbjct 259415 GTGAACTGCTTTGGTTTATGAAAGGTGATACAAAT 259449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512736299510200