Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_025424.1 Length=45648 Score E Sequences producing significant alignments: (Bits) Value seq3 394 3e-105 seq5 389 1e-103 seq361 131 5e-26 seq4 114 4e-21 seq6 107 6e-19 seq2 96.9 1e-15 >seq3 Length=500241 Score = 394 bits (436), Expect = 3e-105 Identities = 359/453 (79%), Gaps = 0/453 (0%) Strand=Plus/Minus Query 25580 TCCTTCTGCTAACATACGATGAGGACAATACTTTCCACTCCATGATTGATGTGTGCGAAC 25639 |||||| | | ||| ||||| || |||| |||||||||||| |||| |||||| || || Sbjct 660 TCCTTCATCGAGCATTCGATGTGGGCAATGCTTTCCACTCCACGATTTATGTGTACGTAC 601 Query 25640 TTTACTAATTGGAATATTGTACTGTTTCATGAGCCCAGCTACGACGATAGCTGCATTATC 25699 |||||||| || |||||| | |||||||| | | ||| | || || ||||||||||| Sbjct 600 ATTACTAATCGGTATATTGAATTGTTTCATTAACTGAGCAATAACAATTGCTGCATTATC 541 Query 25700 CTCCGCTTTATAATATCGATCTCCACCACTTAGAGAGTAACAGATTTCAACTCCAATAGA 25759 |||||| || ||||||| ||| ||||| |||||||| || || ||||| ||||| ||||| Sbjct 540 CTCCGCCTTGTAATATCTATCCCCACCGCTTAGAGAATAGCAAATTTCCACTCCGATAGA 481 Query 25760 TTTACGATTTCCGTTACCGCCACCATCACCGCAATGCCAAGCGTTACGCTCTAAAGGAAT 25819 ||||||||| || || ||| ||||||||| ||||||||| ||||| || || |||| Sbjct 480 TTTACGATTACCATTTCCGTTACCATCACCTGCATGCCAAGCATTACGATCAAACAGAAT 421 Query 25820 ACCTTGTACAGCTTCTTTATCGTCTACCGCAATATGAAACGATACTTGGTTATCATTACG 25879 ||||||||| |||||||| || ||||| |||| ||||||||| ||| |||| ||| | Sbjct 420 ACCTTGTACTGCTTCTTTGTCATCTACTGCAACATGAAACGACACTGAATTATTATTCCC 361 Query 25880 AATCATATAAGCCACTTCGTTATTTGCTGTAGCATCGTTATAAGTATTGTGGACAGTAAT 25939 ||||||||| | | || || | ||||| ||||| || || ||||| || || || || Sbjct 360 AATCATATACGATATCTCATTTTCTGCTGATGCATCATTGTACGTATTATGTACTGTGAT 301 Query 25940 GAATTCTGGATTCATTGTATAAGGGCACTTAGTACCATATTTGCTTGCATCAACTAAATT 25999 ||||||||| ||||||||| || ||||| |||||||||| |||| ||| ||||| || Sbjct 300 GAATTCTGGTGTCATTGTATTGGGACACTTTATACCATATTTACTTGGATCCACTAATTT 241 Query 26000 TTTTCTGATTTCCATTATTAAACATCTCCTTTT 26032 |||||| |||||||||| | | |||||||||| Sbjct 240 TTTTCTAATTTCCATTACTGATTATCTCCTTTT 208 >seq5 Length=406804 Score = 389 bits (430), Expect = 1e-103 Identities = 328/403 (81%), Gaps = 0/403 (0%) Strand=Plus/Minus Query 25077 TTTTATTTTTCAAACTTCACATATTCACCAGAAACCCATTGGTCGCCGCCAACATTATAC 25136 ||||| ||| ||||| | ||||||||||||||||||||||| | || |||||||||||| Sbjct 272189 TTTTACTTTACAAACGTAACATATTCACCAGAAACCCATTGATTTCCACCAACATTATAC 272130 Query 25137 CAACCGTCTCTATATCCCCAAGATTGATATCTTTCACTTTGGTACACATTTTTTACGACA 25196 ||||| ||| ||||||| | ||||||||| |||||| ||| ||||| ||||| || | Sbjct 272129 CAACCATCTTTATATCCAAATGATTGATATTTTTCACCTTGATACACGTTTTTCACAATG 272070 Query 25197 CCATAGTTAGTTCCTGGACCAGTACGAACACGTAATACATCAGCTGTAATAGTTACTACA 25256 || || || |||||||| || ||||||||||| ||||||||||| | ||||| |||||| Sbjct 272069 CCGTAATTTGTTCCTGGGCCGGTACGAACACGCAATACATCAGCGATTATAGTAACTACA 272010 Query 25257 CCAATGCCATCATTTGAAGGTTTAGAAGGAGCTGGTGCATTTTCTCCTGTATAACGAATA 25316 || | || || ||||| | || ||||| | |||| ||||| |||| |||||||||||| Sbjct 272009 CCTACACCCTCGTTTGATGATTGTGAAGGTGTTGGTACATTTCCTCCCGTATAACGAATA 271950 Query 25317 TATGATGAATCATTATATACCCACTGATCGCCACCCAAGTTTAGCCAACCATTTGACTCA 25376 ||||||| ||| ||||| | ||||||||||||||| | |||| ||| |||||||| | Sbjct 271949 TATGATGGATCGTTATAAATCCACTGATCGCCACCGAGATTTAACCAGCCATTTGATTGT 271890 Query 25377 CCCCATACTTGGTAGCATTCTCCTTTACCTAACTTACGAATAACTGCATATCCAGTTCCA 25436 || |||||| |||| | |||||||| ||||| | ||||||||| |||||||||| ||| Sbjct 271889 CCAAATACTTTGTAGGACTCTCCTTTCCCTAATTGACGAATAACGCCATATCCAGTACCA 271830 Query 25437 GGTCCTTTTCGTAAATTCACGTTATCGCCATTAATGTAAGCAA 25479 ||||||||||||||||| || ||| || ||||| ||||||| Sbjct 271829 GGTCCTTTTCGTAAATTTACATTACTACCGTTAATATAAGCAA 271787 >seq361 Length=20807 Score = 131 bits (144), Expect = 5e-26 Identities = 218/313 (70%), Gaps = 3/313 (1%) Strand=Plus/Minus Query 13484 ATATATTCTTGCATCCTTTTAAACTCTTGAATAAACTTAATCTTCATTTGAACAGCTTCT 13543 ||||||| | ||| | ||| ||||||| ||||| || || |||||| ||| |||||| Sbjct 16264 ATATATTGCTTCATTCGTTTGAACTCTTTCATAAATTTGATTTTCATTCCAACCGCTTCT 16205 Query 13544 CTTGTGTTGTAACTCATAACAACTAATGTAAAGGCTTCTTCTGTCATATCA-ATTTTCGG 13602 || || | || | |||||||| ||| || || ||||||||||| | |||| |||| || Sbjct 16204 CTACTGGTATATCCCATAACAAGTAACGTGAATGCTTCTTCTGTTAAATCATATTTAGGG 16145 Query 13603 ATAATAACGTCCTCTG--CTCTCATAAGTTCGCTCCGCAAAATTGCTTAGTGAAAATTCG 13660 || | || || | |||||| ||| |||||| | | ||| || Sbjct 16144 ATTCGCCTATTCTTTGAATTAAAATAAGTGGACTCGTGAAAATTTTCTCCTCCAAACTCT 16085 Query 13661 TAACCTGCATATTCCATTTGTTTTCTAATATCTCTTAGTACGTCAGCGTGATTTTTACAA 13720 | |||| ||||| | |||||||||| || || | | ||||| ||||||||| Sbjct 16084 TCACCTACATATACAATTTGTTTTCGAACTTCCTTCAAAACGTCGAAGTGATTTTTTTTG 16025 Query 13721 AACACCTCAGCAATCGTTAAACTATTTGTTACTGCCTTTCCATTAACTTCAAATACTAAC 13780 || | || ||||| | ||||||| |||||| | || |||||||||||||||||||| Sbjct 16024 AATATCTTCGCAATTATCAAACTATCCGTTACTACTTTGCCATTAACTTCAAATACTAAT 15965 Query 13781 TCAGCATGTACTG 13793 | |||||||| Sbjct 15964 GAACTATGTACTG 15952 >seq4 Length=425142 Score = 114 bits (126), Expect = 4e-21 Identities = 90/105 (86%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 1558 TTGTGTCCA-TTTGTTTTCTAAAATGCAACACGTTTGCGCTTATCTTTCCTTAACAACAA 1616 |||||| | |||||||| ||||| |||||||||||| ||| | ||||||||||| |||| Sbjct 184724 TTGTGTTGAGTTTGTTTTGTAAAACGCAACACGTTTGGGCTGACCTTTCCTTAACGACAA 184665 Query 1617 ACAAGACGCC-CCCAGATCACGGAAGCGCCTACGATAATTGCTAT 1660 |||||||||| ||||| ||||| ||||||| | ||||||||||| Sbjct 184664 ACAAGACGCCAACCAGAACACGGCAGCGCCTGCTATAATTGCTAT 184620 >seq6 Length=382643 Score = 107 bits (118), Expect = 6e-19 Identities = 102/130 (78%), Gaps = 9/130 (7%) Strand=Plus/Plus Query 18739 TATTTCTCAATGAATAATATAGATAAATATGGTAAAATAGGAATTGGGTAGTATTCTATT 18798 ||||||||||||||||| | | | || ||||||||||| | |||| | | | || | | Sbjct 174053 TATTTCTCAATGAATAAAACAACTTAACATGGTAAAATAATAGTTGGATGGGAGTCCAAT 174112 Query 18799 AACTCTCTCGTTATTAAAATTAAAGTGGTTATCAAGTCGAAGGAAGGCACCTTAGGGTGT 18858 | | |||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 174113 ATAT-------TATTAAAATTAAGATGGTT--CAAGTCGAAGGAAGGCACCTTAGGGTGT 174163 Query 18859 CTTTTCTTTA 18868 |||||||||| Sbjct 174164 CTTTTCTTTA 174173 Score = 82.4 bits (90), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 7/129 (5%) Strand=Plus/Minus Query 18739 TATTTCTCAATGAATAATATAGATAAATATGGTAAAATAGGAATTGGGTAGTATTCTATT 18798 ||||||||||| || || | | | || |||||||||| | |||| | | || | | Sbjct 152602 TATTTCTCAATAAACAAAACAACTTAACGTGGTAAAATAATAGTTGGACGGGAGTCCAAT 152543 Query 18799 AACTCTCTCGTTATTAAAATTAAAGTGGTTATCAAGTCGAAGGAAGGCACCTTAGGGTGT 18858 | | | |||||||||||| ||||| ||||||| |||||||||||||||||||| Sbjct 152542 ACATAT-----TATTAAAATTAAGATGGTT--CAAGTCGGAGGAAGGCACCTTAGGGTGT 152490 Query 18859 CTTTTCTTT 18867 || |||||| Sbjct 152489 CTATTCTTT 152481 >seq2 Length=633208 Score = 96.9 bits (106), Expect = 1e-15 Identities = 70/79 (89%), Gaps = 4/79 (5%) Strand=Plus/Minus Query 2529 TTTACGGCTTATAAAAATATTAAAGGGGATGGGAGAAA--TTCACGTTCGAACATAAGGG 2586 |||||||||||||||||||||||||||||||||||||| ||||||||| |||| | ||| Sbjct 47792 TTTACGGCTTATAAAAATATTAAAGGGGATGGGAGAAATTTTCACGTTCAAACAAAGGGG 47733 Query 2587 GATATG--TCTATGTGAAT 2603 ||||| | ||||||||| Sbjct 47732 TATATGTTTGTATGTGAAT 47714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145942562834900