Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq2 111 4e-19 seq4 93.3 9e-14 >seq2 Length=633208 Score = 111 bits (122), Expect = 4e-19 Identities = 280/412 (68%), Gaps = 24/412 (6%) Strand=Plus/Plus Query 298889 TCTTGCTCGCAAAACCAAAAAGAATGCTATTCTCACTGGTGAAGCTGGTGTAGGTAAAAC 298948 |||| | || ||||| ||||| ||| | || | | ||| || | ||||| |||||||| Sbjct 18992 TCTTTCACGTAAAACGAAAAACAATCCGGTTTTAATTGGGGAGCCAGGTGTTGGTAAAAC 19051 Query 298949 ACAAATCATCGACGGGCTTGCACAAGCTATTGCTGAT---GGTAACGTACCTGAACACCT 299005 | |||| | || ||||| || || ||||| ||| || | ||||||||| | Sbjct 19052 AGCAATCGTTGAAGGGCTAGCCCAGCGTATTG-TGAAAAAGG--ATGTACCTGAAGGATT 19108 Query 299006 GAAAGACGTTGAA--ATTCTTTCACTAAATGTTGGTGCATTGACTGCTGGTACTAAGTAT 299063 |||||| | ||| ||| || | || || | ||||| | |||||| | || | Sbjct 19109 GAAAGA--TAGAACGATTTTTGCGTTAGATATGAGTGCACTCGTAGCTGGTGCGAAATTC 19166 Query 299064 CGTGGTGAATTTGAAGAACGCATCGACAATTTGC--TAAAAGAACTAAAGAAACGTGAAA 299121 |||||||| || ||||| || || ||| || |||| ||| | || || ||||| Sbjct 19167 CGTGGTGAGTTCGAAGAGCG--TCTGCAAGCTGTATTAAATGAAATTAAAAAGAGTGAAG 19224 Query 299122 -ATAC-TATTGTT-TTCATTGATGAAATTCATATTATGGTTGGGGCTGGTTCCGCAAGTA 299178 | | | || || |||||||||||| |||||| || ||||| |||||| || Sbjct 19225 GACGCATTTTATTATTCATTGATGAACTTCATACAATAGTTGGAGCTGGTAAAACAG--- 19281 Query 299179 ATGGTTCTATGGA--CATGAGCAATATGCTTAAGCCAGCACTTTCACGTGGTGAGATTCG 299236 | || | ||||| || || |||||| | || || ||| |||||||||| | | Sbjct 19282 AAGGAGCCATGGATGCAGGA--AATATGTTAAAACCGATGCTTGCACGTGGTGAACTGCA 19339 Query 299237 TGTAATTGGTGCAACAACATATGATGAATATCGTAAAAATATCGAGAAAGAT 299288 | ||||| || |||||| ||||||||||| ||| |||| ||||||||| Sbjct 19340 TTGTATTGGAGCCACAACACTAGATGAATATCGCAAATATATTGAGAAAGAT 19391 >seq4 Length=425142 Score = 93.3 bits (102), Expect = 9e-14 Identities = 170/242 (70%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 279316 TATGACGTTACCACCTTGTCATA-GCTTTGTGCAATTTTGTGTAGTGCAAGGAAAACTAA 279374 |||| | ||||| |||||||||| ||| | | || |||| ||||| | ||||| || Sbjct 259815 TATGGCCTTACCGCCTTGTCATACGCTAT-TCCAGTTTTATGTAGCAGATGGAAAGCTTT 259873 Query 279375 GCTGTATTCTGCATCAACGCTCCGCTGATCTATTTTTAGGAGTTCCATTTAATATCAGTA 279434 ||| | ||||| | | ||| |||| | ||| |||||||||| || | Sbjct 259874 CTTGTCAGTTATATCAAAGAAGTGGTGACATATTCCTTGGAATTCCATTTAACATTGCAA 259933 Query 279435 GTTACTCACTACTAACTCATATGATTGCACA-AATTACTGGTTTAGATGTTGGTGAATTT 279493 |||||||||||||||| ||| | |||||||| | | | || | || || || |||||| Sbjct 259934 GTTACTCACTACTAACACATTTAATTGCACATGAATGC-GGACTTGAAGTGGGAGAATTT 259992 Query 279494 ATT--TGGAATGGTGGTGATTGTCACATTTATAAAAACCACGTTGAACAAGTAAAAGAAC 279551 || | ||| ||||||| |||||||||| ||| || ||||||||||| || | | Sbjct 259993 GTTCATACAAT--TGGTGATGCACACATTTATACAAATCATTTTGAACAAGTAGAAAAGC 260050 Query 279552 AA 279553 || Sbjct 260051 AA 260052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1115093401126705