Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_027352.1 Length=159492 Score E Sequences producing significant alignments: (Bits) Value seq7 123 3e-23 seq361 109 6e-19 seq8 109 6e-19 seq5 95.1 1e-14 >seq7 Length=350003 Score = 123 bits (136), Expect = 3e-23 Identities = 331/502 (66%), Gaps = 7/502 (1%) Strand=Plus/Plus Query 7612 TAACAAAGGAGAGGA--ATTAATA-TGGGAACATATAACGTACACGGTGGTCACAACAGT 7668 ||| |||||||| | || |||| ||| | ||||| | ||||| || ||||| ||| Sbjct 347523 TAAGAAAGGAGATGTTGATAAATAATGGCCAGATATAGTTTGCACGGAGGACACAATAGT 347582 Query 7669 ATTGTGCAAGGAGCTAACTACGGAAACCGAAAAGAGCACGTTATGGATCGTCAAGTGAAG 7728 ||||| ||||| ||||| | || || || ||||| |||||| | ||| | ||||| || Sbjct 347583 ATTGTTCAAGGTGCTAATTTTGGGAATCGGAAAGAACACGTTTTAGATAGGCAAGTTAAA 347642 Query 7729 GACGCTCTAATCAGTAAGCTACGTAGTCTTGGTCACACAGTATACGACTGCACAGATGAG 7788 || ||| | | |||| || | || || ||||| || || ||| || || ||| Sbjct 347643 GATGCTGTGGCGACTAAGTTAAGATCCCTAGGACACACGGTTTATGACGATACGGACGAG 347702 Query 7789 ACAGGTTCTACACAGTCTGCTAACTTACGTAACATCGTAGCTAAATGTAACGCTCATAAC 7848 ||| | || || || || ||| ||| ||| | || | || | ||| Sbjct 347703 GTAGGGGCAACTCAATCACAAAATTTAAATAATATCATTCGGAATAGCAATTCCCATGCT 347762 Query 7849 GTAGACTTAGACATCTCATTACACTTAAACGCATTCAACGGATCGGCTAATGGTGTTGAG 7908 || || |||| || || || || | || ||| | ||| | | ||||||||| Sbjct 347763 GTGGATTTAGTTATTTCTTTTCATCTTAATGCAAGTGATGGAAATGGACAGGGTGTTGAG 347822 Query 7909 GTTTGCTACTACGACCAACAAGCTCTAGCTGCTAAAGTGTCTAAGCAATTGTCTGACGAC 7968 |||| || || || || ||| | | || |||||| | || ||| | | | || Sbjct 347823 GTTTTGTATTATGATCAGAAAGATTTGGCGGCTAAAATCTCAGCTCAACTAGCAAAAGAT 347882 Query 7969 ATCGGATGGTCTAACCGTGGAGCTAAACCTCGTACAGACCTTTA--CGTTCTAAACAACA 8026 || |||||| | | || || || |||| ||||| || |||| || |||| | Sbjct 347883 ATTGGATGGCGTGATCGAGGTGCGAAACAGCGTACGGA--TTTAGCGGTATTAAATGGGA 347940 Query 8027 CAAGAGCACCTGCTATCTTAATCGAATTAGGATTCATCGACAACGATAGCGACATGGCTA 8086 | | |||||||||||| | || ||||||||||| || ||||| || || ||||| | Sbjct 347941 CGAAAGCACCTGCTATTCTTATAGAATTAGGATTTATTGACAATGAATCTGATATGGCAA 348000 Query 8087 AGTGGAACGTAGATAAAATCGC 8108 | ||||| || ||||||||||| Sbjct 348001 AATGGAATGTTGATAAAATCGC 348022 Score = 104 bits (114), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 13/206 (6%) Strand=Plus/Minus Query 141721 TAACACATCAATTCTATTTCCCTTAATGGAACCTCCTGTATCTAGTGCAACTGCTTCTCC 141780 ||| |||||||| | ||| || ||||| | || ||| ||||| || | |||||||| Sbjct 229219 TAAAACATCAATACGATTACCTTTAATTGCACTTCCAGTATCACCAGCGATCGCTTCTCC 229160 Query 141781 ATATCCTTCGACATGAACTCTCGTTCCTAATGGGATTACTCTCGGATCGACTGCGATAAC 141840 ||| ||||| || ||| | | |||||||||||||||| |||| || |||||||||| Sbjct 229159 ATAGCCTTCTACCCATACTTTAGATCCTAATGGGATTACTTTCGGGTCAACTGCGATAAT 229100 Query 141841 TCTAGCGTTAGGATTCTTACTCAAGTTGAATCCTG-----TAGCCGTTAATACTTGTCCA 141895 ||| || ||||| | ||| |||| || | || ||||| || ||||| Sbjct 229099 TCTCATATTCGGATT-----TGCCGTTAAATCATGCCCCATCGCAGTTAAAACGCGTCCA 229045 Query 141896 CCGTATGTACCACCATTCTCACTTGG 141921 || ||||| |||||| |||||||| Sbjct 229044 CCATATGT---ACCATTTTCACTTGG 229022 >seq361 Length=20807 Score = 109 bits (120), Expect = 6e-19 Identities = 169/239 (71%), Gaps = 13/239 (5%) Strand=Plus/Minus Query 141721 TAACACATCAATTCTATTTCCCTTAATGGAACCTCCTGTATCTAGTGCAACTGCTTCTCC 141780 ||| |||||||| | |||||| ||||| | ||| || || ||| |||| |||||||| Sbjct 1288 TAATACATCAATACGATTTCCTTTAATCGCACCACCGGTGTCTCCAGCAATCGCTTCTCC 1229 Query 141781 ATATCCTTCGACATGAACTCTCGTTCCTAATGGGATTACTCTCGGATCGACTGCGATAAC 141840 ||||||||| || ||| | | ||| | || |||||| ||||||| || || || || Sbjct 1228 ATATCCTTCTACCCATACTTTTGATCCAAGCGGAATTACTTTCGGATCAACAGCAATTAC 1169 Query 141841 TCTAGCGTTAGGATTCTTACTCAAGTTGAATCCTG-----TAGCCGTTAATACTTGTCCA 141895 | | || |||| || || ||| |||| || | || |||||||| | ||| Sbjct 1168 TTTCATATTTGGAT--TTGCT---GTTAAATCATGCCCCATTGCAGTTAATACACGACCA 1114 Query 141896 CCGTATGTACCACCATTCTCACTTGGGTGTGGTGTGTATGCAGTTGCTTCCACTGTGAT 141954 || || | |||||||||||| || | || ||| ||||| || ||||| ||||| || Sbjct 1113 CCATACG---AACCATTCTCACTCGGATCTGCTGTATATGCCGTCGCTTCTACTGTAAT 1058 >seq8 Length=318055 Score = 109 bits (120), Expect = 6e-19 Identities = 167/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 141718 AAGTAACACATCAATTCTATTTCCCTTAATGGAACCTCCTGTATCTAGTGCAACTGCTTC 141777 |||||| | |||||| | || || ||||| | ||| || |||||| || | ||||| Sbjct 28311 AAGTAAGATATCAATACGGTTACCTTTAATTGCACCACCAGTATCTCCAGCGATAGCTTC 28370 Query 141778 TCCATATCCTTCGACATGAACTCTCGTTCCTAATGGGATTACTCTCGGATCGACTGCGAT 141837 ||| || ||||| || ||| | | |||||||||||||||| |||| || || ||||| Sbjct 28371 TCCGTAACCTTCTACCCATACTTTAGATCCTAATGGGATTACTTTCGGGTCAACAGCGAT 28430 Query 141838 AACTCTAGCGTTAGGATTCTTACTCAAGT--TGAATCCTGTAGCCGTTAATACTTGTCCA 141895 | | | || |||||| | | || | ||| || | || |||||||| | || Sbjct 28431 CATTTTCATATTTGGATTCGCAGTTAAATCATGA--CCCATTGCAGTTAATACACGGCCG 28488 Query 141896 CCGTATGTACCACCATTCTCACTTGGGTGTGGTGTGTATGCAGTTGCTTCCACTGT 141951 || ||||| ||||| || || || ||||| | ||| ||||| || ||| | ||||| Sbjct 28489 CCATATGTGCCACCGTTTTCGCTCGGGTGAGCTGTATATGCTGTAGCTACAACTGT 28544 >seq5 Length=406804 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 154546 GTTCCATGTGTTGTAGTACTTATGTTTCCCGTCTAGATAGAATACGGCAGAATCAAATGT 154605 |||||| ||||| || || |||| ||| ||||||| ||| | || |||| | |||| | Sbjct 286226 GTTCCAAGTGTTATAATATTTATTTTTACCGTCTAAATAAATAACTTCAGAGTTAAATTT 286167 Query 154606 CGGATCGTCAATAGCGATGTACGGATTTGTTACGGATGCATTAAGTTCTAGTTCTAGTAC 154665 ||||||||||||| || |||| | | |||||| || |||||||||| || Sbjct 286166 AGGATCGTCAATAGTTATATACGCTCCTTCAATGGATGCGTTTTTCTCTAGTTCTAAAAC 286107 Query 154666 ACGTACGTTACCACCTACAACTAATTTGGTTCCGTACCCGAATAACAATTCTACGTTCTT 154725 | | ||| || | || || |||| || |||||| || ||||| |||| || || Sbjct 286106 TCTAAAGTTTCCCTCAACTACAAATTGGGATCCGTAACCAAATAATAATTTCACACCTTT 286047 Query 154726 CTTAACAATAATCGGTGCAGTAATGTAATA 154755 |||||||| || |||| || || | ||| Sbjct 286046 TTTAACAATGATTGGTGACGTGATTTTATA 286017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510211671354400