Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_027355.1 Length=159071 Score E Sequences producing significant alignments: (Bits) Value seq7 268 9e-67 seq4 188 7e-43 seq8 120 3e-22 seq361 118 1e-21 seq6 107 2e-18 seq16 84.2 2e-11 >seq7 Length=350003 Score = 268 bits (296), Expect = 9e-67 Identities = 388/546 (71%), Gaps = 5/546 (1%) Strand=Plus/Plus Query 43675 AATAAAACAGTAGAGGAGAGATATTATGGGTTACATCGTTGATATGTCTAAATGGAATGG 43734 ||| ||| || ||| | | ||| |||||||| || || ||||| || ||||||||||| Sbjct 348702 AATGAAAAAGGAGATGTTAAATA--ATGGGTTATATTGTGGATATTTCGAAATGGAATGG 348759 Query 43735 GAGTCCCGATTGGGATACTGCCAAAGGTCAACTAGATTTAGTTATTGCTCGTGTACAAGA 43794 | ||||||| || | ||| | ||||| || ||||| ||||| ||||| Sbjct 348760 CGACATTAACTGGGATATCGCAGCACCACAATTGGATTTCGTAATTGCACGTGTGCAAGA 348819 Query 43795 CGGTTCTAACTATGTTGATCCTGTATATAAGGACTACGTAGCGGCTATGAAAGCTCGCAA 43854 ||||| |||||||| |||||| ||||||| | || ||| || |||||||| || || Sbjct 348820 TGGTTCAAACTATGTAGATCCTTTATATAAAAATTATGTACAAGCAATGAAAGCACGGAA 348879 Query 43855 CATCCCGTTTGGTAGCTACGCATTCTGCCGATTCGTTTCTGTAGAAGATGCGAAAGTAGA 43914 || |||||||||| || || ||||| || |||||||| ||||| ||||| |||| Sbjct 348880 TATTCCGTTTGGTAATTATGCGTTCTGTCGTTTCGTTTCAGTAGAGGATGCACGGATAGA 348939 Query 43915 AGCTAGAGACTTTTGGAACCGTGGAGATAAAGACTCACTATTTTGGGTTGCAGACGTAGA 43974 ||| |||||||||||||||||||| |||||| | || | ||||||| || |||||||| Sbjct 348940 AGCAAGAGACTTTTGGAACCGTGGTGATAAAAATGCAACAGTTTGGGTAGCTGACGTAGA 348999 Query 43975 AGTAACAACTATGAGTGACATGCGTGCAGGAACGCAAGCATTCATTGACGAACTGTACCG 44034 ||||| ||| |||| || ||| | || || | ||||| || ||||| ||| | | | Sbjct 349000 AGTAAGAACAATGAACGATATGAGAGCGGGTGCACAAGCTTTTATTGATGAATTACGCAG 349059 Query 44035 TTTAGGTGCTAAAAAAGTTGGTCTATACGTTGGGCACCACAAATACGTAGAGTTCGGAGC 44094 ||||| ||||| || | |||| |||| ||| || || | || | || ||| Sbjct 349060 ATTAGGAGCTAAGAAGGCTGGTTTATATATTGCTCATCATATGTATGCTCCATTTGGAAT 349119 Query 44095 AGCACAGATTAAATGTGACTTCACTTGGATTCCTCGTTACGGAGCT---AAACCTGCTTA 44151 ||| | | || | ||| || ||||||||||||||||| | | ||||| || || Sbjct 349120 GGCAAATTTCAATTCTGATTTTGTATGGATTCCTCGTTACGGTGGTAACAAACCGGCGTA 349179 Query 44152 CCCTTGTGACCTATGGCAATACGATGAGTATGGTCAAGTACCTGGTATTGGTAAATGTGA 44211 | ||||| | ||||||||| || || | || ||||||| || || ||||| Sbjct 349180 TTCATGTGATATTTGGCAATACACAGAAACAGGGAATGTGGCTGGTATCGGCAAGTGTGA 349239 Query 44212 TTTAAA 44217 |||||| Sbjct 349240 TTTAAA 349245 Score = 120 bits (132), Expect = 3e-22 Identities = 166/232 (72%), Gaps = 13/232 (6%) Strand=Plus/Minus Query 19148 ACATCAATACGATTACCTTTGATAGCTCCACCTGTATCTAGTGCAACTGCTTCTCCATAT 19207 |||||||||||||||||||| || || | || ||||| || | ||||||||||| Sbjct 229215 ACATCAATACGATTACCTTTAATTGCACTTCCAGTATCACCAGCGATCGCTTCTCCATAG 229156 Query 19208 CCTTCGACATGAACTCTCGTTCCTAATGGGATTACTCTCGGATCGACTGCGATAACTCTA 19267 ||||| || ||| | | |||||||||||||||| |||| || |||||||||| ||| Sbjct 229155 CCTTCTACCCATACTTTAGATCCTAATGGGATTACTTTCGGGTCAACTGCGATAATTCTC 229096 Query 19268 GCGTTAGGATTCTTACTCAAGTTGAATCCTG-----TAGCAGTTAATACTTGTCCACCGT 19322 || ||||| | ||| |||| || | |||||||| || ||||||| | Sbjct 229095 ATATTCGGATT-----TGCCGTTAAATCATGCCCCATCGCAGTTAAAACGCGTCCACCAT 229041 Query 19323 ATGTACCACCATTCTCACTTGGGTGTGGTGTGTACGCAGTTGCTTCCACTGT 19374 |||| |||||| |||||||| | | || ||||| || ||| | || || Sbjct 229040 ATGT---ACCATTTTCACTTGGATCAGCAGTATACGCTGTCGCTACTACCGT 228992 >seq4 Length=425142 Score = 188 bits (208), Expect = 7e-43 Identities = 391/574 (68%), Gaps = 11/574 (2%) Strand=Plus/Plus Query 43675 AATAAAACAGT--AGAGGAGA-GATAT-TATGGGTTACATCGTTGATATGTCTAAATGGA 43730 ||||| ||| | ||||||| || || |||||| || || || ||||| || ||||||| Sbjct 333716 AATAAGACATTCAAGAGGAGCTGAAATGTATGGGGTATATTGTAGATATTTCAAAATGGA 333775 Query 43731 ATGGGAGTCCCGATTGGGATACTGCCAAAGGTCAACTAGATTTAGTTATTGCTCGTGTAC 43790 |||| | | ||||||||| ||| | ||| |||||||||| |||||| | || | Sbjct 333776 ATGGAACTATTAATTGGGATATTGCAGCATCTCAGTTAGATTTAGTGATTGCTAGAGTTC 333835 Query 43791 AAGACGGTTCTAACTATGTTGATCCTGTATATAAGGACTACGTAGCGGCTATGAAAGCTC 43850 |||| || ||||| || ||| | | ||| | | || || | |||||| | Sbjct 333836 AAGATGGCTCTAATACGGTGGATTTTATGTATCAAAATTATGTTAGTGAAATGAAAAAGC 333895 Query 43851 GCAACATCCCGTTTGGTAGCTACGCATTCTGCCGATTCGTTTCTGTAGAAGATGCGAAAG 43910 | ||||| || |||| || || || ||||| || | ||| | | ||||| || Sbjct 333896 ATAGTATCCCATTCGGTAATTATGCTTTTTGCCGTTTTATATCTATTGCTGATGCAAAGA 333955 Query 43911 TAGAAGCTAGAGACTTTTGGAACCGTGGAGATAAAGACTCACTA--TTTTGGGTTGCAGA 43968 ||| || ||| |||||||| ||||| ||| || || ||| |||||||| || || Sbjct 333956 AAGAGGCACAAGATTTTTGGAATCGTGGTGATCAAT-CTG-CTAAGTTTTGGGTAGCGGA 334013 Query 43969 CGTAGAAGTAACAACTATGAGTGACATGCGTGCAGGAACGCAAGCATTCATTGACGAACT 44028 | ||||||| ||| ||| || |||| | || || || ||||| ||||| ||| | Sbjct 334014 CATAGAAGTTCAAACGATGGTAGATATGCAAGGCGGGACACAGGCATTTATTGATGAATT 334073 Query 44029 GTACCGTTTAGGTGCTAAAAAAGTTGGTCTATACGTTGGGCACCACAAATACGTAGAGTT 44088 ||||||||||| ||||||| || ||||||| || || |||| || || || Sbjct 334074 ACGCCGTTTAGGTGTGGAAAAAGTAGGATTATACGTAGGACATCACACGTATTTATCATT 334133 Query 44089 CGGAGCAGCACAGATTAAATGTGACTTCACTTGGATTCCTCGTTACGGAG---CTAAACC 44145 |||||| | ||| || ||| |||| ||||| |||||||| |||| ||| | Sbjct 334134 TGGAGCATGTAATATTGAAGCTGATTTCATATGGATCCCTCGTTATGGAGGGAATAAGTC 334193 Query 44146 TGCTTACCCTTGTGACCTATGGCAATACGATGAGTATGGTCAAGTACCTGGTATTGGTAA 44205 || || || || || | |||||||| || | || | || ||||||||||| || Sbjct 334194 AGCATATCCATGCGATATGTGGCAATATACGGATTCAGGGAATGTTCCTGGTATTGGGAA 334253 Query 44206 ATGTGATTTAAACCGCTTAAACGGAGATAAATCA 44239 ||||||| | || || ||| ||| |||| ||| Sbjct 334254 ATGTGATCTGAATCGATTAGTAGGAAATAAGTCA 334287 >seq8 Length=318055 Score = 120 bits (132), Expect = 3e-22 Identities = 164/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 19150 ATCAATACGATTACCTTTGATAGCTCCACCTGTATCTAGTGCAACTGCTTCTCCATATCC 19209 ||||||||| |||||||| || || ||||| |||||| || | |||||||| || || Sbjct 28320 ATCAATACGGTTACCTTTAATTGCACCACCAGTATCTCCAGCGATAGCTTCTCCGTAACC 28379 Query 19210 TTCGACATGAACTCTCGTTCCTAATGGGATTACTCTCGGATCGACTGCGATAACTCTAGC 19269 ||| || ||| | | |||||||||||||||| |||| || || ||||| | | | Sbjct 28380 TTCTACCCATACTTTAGATCCTAATGGGATTACTTTCGGGTCAACAGCGATCATTTTCAT 28439 Query 19270 GTTAGGATTCTTACTCAAGT--TGAATCCTGTAGCAGTTAATACTTGTCCACCGTATGTA 19327 || |||||| | | || | ||| || | ||||||||||| | || || ||||| Sbjct 28440 ATTTGGATTCGCAGTTAAATCATGA--CCCATTGCAGTTAATACACGGCCGCCATATGTG 28497 Query 19328 CCACCATTCTCACTTGGGTGTGGTGTGTACGCAGTTGCTTCCACTGT 19374 ||||| || || || ||||| | ||| || || || ||| | ||||| Sbjct 28498 CCACCGTTTTCGCTCGGGTGAGCTGTATATGCTGTAGCTACAACTGT 28544 >seq361 Length=20807 Score = 118 bits (130), Expect = 1e-21 Identities = 171/239 (72%), Gaps = 13/239 (5%) Strand=Plus/Minus Query 19144 TAGTACATCAATACGATTACCTTTGATAGCTCCACCTGTATCTAGTGCAACTGCTTCTCC 19203 || ||||||||||||||| ||||| || || ||||| || ||| |||| |||||||| Sbjct 1288 TAATACATCAATACGATTTCCTTTAATCGCACCACCGGTGTCTCCAGCAATCGCTTCTCC 1229 Query 19204 ATATCCTTCGACATGAACTCTCGTTCCTAATGGGATTACTCTCGGATCGACTGCGATAAC 19263 ||||||||| || ||| | | ||| | || |||||| ||||||| || || || || Sbjct 1228 ATATCCTTCTACCCATACTTTTGATCCAAGCGGAATTACTTTCGGATCAACAGCAATTAC 1169 Query 19264 TCTAGCGTTAGGATTCTTACTCAAGTTGAATCCTG-----TAGCAGTTAATACTTGTCCA 19318 | | || |||| || || ||| |||| || | ||||||||||| | ||| Sbjct 1168 TTTCATATTTGGAT--TTGCT---GTTAAATCATGCCCCATTGCAGTTAATACACGACCA 1114 Query 19319 CCGTATGTACCACCATTCTCACTTGGGTGTGGTGTGTACGCAGTTGCTTCCACTGTGAT 19377 || || | |||||||||||| || | || ||| || || || ||||| ||||| || Sbjct 1113 CCATACG---AACCATTCTCACTCGGATCTGCTGTATATGCCGTCGCTTCTACTGTAAT 1058 >seq6 Length=382643 Score = 107 bits (118), Expect = 2e-18 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 19092 TAACTTTCACTTGTTTTCGACCCCAAGCATTTGCTTGTGAATCAGTTGGTAATAGTACAT 19151 ||| | |||||| ||| || ||||| || |||||| || || || || || |||| Sbjct 157060 TAATTCTCACTTTTTTACGTCCCCATTCACGTGCTTGCTTTTCTGTAGGAAACAGAACAT 157119 Query 19152 CAATACGATTACCTTTGATAGCTCCACCTGTATCTAGTGCAACTGCTTCTCCATATCCTT 19211 |||| ||| ||||| ||||| |||||||||||| |||| ||| || || ||||||| Sbjct 157120 CAATTTTATTGCCTTTAATAGCCCCACCTGTATCTCCAGCAATTGCATCACCGTATCCTT 157179 Query 19212 CGACATGAACTCTCGTTCCTAATGGGATTACTCTCGGATCGACTGCGA-TAACTCTAGCG 19270 | || |||| ||||||||| | || ||| | ||||| ||||| | ||||| | | Sbjct 157180 CAACCCAAACTTTCGTTCCTAGTTTAATAACTTTAGGATCAACTGCAATTAACT-TGATG 157238 Query 19271 TTAGGATTCTT 19281 |||||||| || Sbjct 157239 TTAGGATTTTT 157249 Score = 82.4 bits (90), Expect = 8e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 19159 ATTACCTTTGATAGCTCCACCTGTATCTAGTGCAACTGCTTCTCCATATCCTTCGACATG 19218 ||||||||| ||||||||||| ||||| || | |||| |||| || ||||| || Sbjct 339159 ATTACCTTTAATAGCTCCACCAGTATCACCAGCGATTGCTACTCCGTAACCTTCAACCCA 339100 Query 19219 AACTCTCGTTCCTAATGGGATTACTCTCGGATCGACTGCGATAACTCTAGCGTTAGGATT 19278 ||| | | |||||||| || || || ||||| ||||| || | | | ||| ||||| Sbjct 339099 TACTTTTGAACCTAATGGAATGACACTTGGATCAACTGCAATTAGTTTCATGTTTGGATT 339040 Query 19279 CTTACTCAAGTTGAATCCTGTAGCAGTTAATACTTGTCCACCGTATGTACCACCATTCTC 19338 | |||||| ||| ||| | | |||||| | || | || |||||| || Sbjct 339039 AGCTGTTAAGTTGTGGCCTAAAGCTGATTTTACTTGGTCGCCTGCTTTATAACCATTTTC 338980 Query 19339 ACTTGGGTGTGGTGTGTACGCAGTTGCT 19366 | ||| | || |||||| || |||||| Sbjct 338979 AAGTGGATCTGCTGTGTAAGCTGTTGCT 338952 >seq16 Length=199848 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/198 (70%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 19084 TAATATCGTAACTTTCACTTGTTTTCGACCCCAAGCATTTGCTTG---TGAATCAGTTGG 19140 ||| || ||||||| ||| | ||| |||||| |||| ||||| ||||| |||| Sbjct 160477 TAAAATTTTAACTTTAACTGTTCTTCTACCCCAGTCATTAGCTTGAGCTGAAT---TTGG 160421 Query 19141 TAATAGTACATCAATACGATTACCTTTGATAGCTCCACCTGTATCTAGTGCAACTGCTTC 19200 | || || |||||| || ||||| || || | ||| |||||| |||| |||| Sbjct 160420 CATTAATAGATCAATGATATGCCCTTTTATTGCACTACCAGTATCTCCAGCAATTGCTGT 160361 Query 19201 TCCATATCCTTCGACATGAACTCTCGTTCCTAATGGGATTACTCTCGGATCGACTGCGAT 19260 |||||||||||| |||| || | | ||||||||||| || ||||| || || || Sbjct 160360 TCCATATCCTTCTACATATACAGTAGAACCTAATGGGATAACAGATGGATCTACAGCAAT 160301 Query 19261 AACTCTAGCGTTAGGATT 19278 | | | ||| ||||| Sbjct 160300 TAATTTCATGTTTGGATT 160283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 508864563048200