Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq2 111 4e-19 seq4 100 6e-16 >seq2 Length=633208 Score = 111 bits (122), Expect = 4e-19 Identities = 280/412 (68%), Gaps = 24/412 (6%) Strand=Plus/Minus Query 332045 ATCTTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACACGAATCTC 332104 ||||||||| |||| ||| ||||||||||| |||||| || ||||| | | | || Sbjct 19391 ATCTTTCTCAATATATTTGCGATATTCATCTAGTGTTGTGGCTCCAATACAATGCAGTTC 19332 Query 332105 ACCACGTGAAAGTGCTGGCTTAAGCATATTGCTCATG--TCCATAGAACCATTACTTGCG 332162 |||||||| ||| || || | |||||| || || ||||| | || | || Sbjct 19331 ACCACGTGCAAGCATCGGTTTTAACATATT--TCCTGCATCCATGGCTCCTT---CTGTT 19277 Query 332163 GAACCAGCCCCAACCATAATATGAATTTCATCAATGAA-AACAATA-GTAT-TTTCACGT 332219 |||||| ||||| || |||||| |||||||||||| || || | | | ||||| Sbjct 19276 TTACCAGCTCCAACTATTGTATGAAGTTCATCAATGAATAATAAAATGCGTCCTTCACTC 19217 Query 332220 TTCTTTAGTTCTTTTA--GCAAATTGTCGATGCGTTCTTCAAATTCACCACGATACTTAG 332277 || || | ||| |||| || ||| || || ||||| || |||||||| | || | Sbjct 19216 TTTTTAATTTCATTTAATACAGCTTGCAGA--CGCTCTTCGAACTCACCACGGAATTTCG 19159 Query 332278 TACCAGCAGTCAATGCACCAACATTTAGTGAAAGAAT--TTCAACGTCTTTCAGGTGTTC 332335 |||||| | ||||| | || || | || ||| ||| | ||||||| ||| Sbjct 19158 CACCAGCTACGAGTGCACTCATATCTAACGCAAAAATCGTTCTA--TCTTTCAATCCTTC 19101 Query 332336 AGGTACGTTACC---ATCAGCAATAGCTTGTGCAAGCCCGTCGATGATTTGTGTTTTACC 332392 |||||| | || ||| ||||| || || ||||| || | |||| ||||||||| Sbjct 19100 AGGTACAT--CCTTTTTCA-CAATACGCTGGGCTAGCCCTTCAACGATTGCTGTTTTACC 19044 Query 332393 TACACCAGCTTCACCAGTGAGAATAGCATTCTTTTTGGTTTTGCGAGCAAGA 332444 ||||| | || ||| | | || | ||| ||||| ||||| || | |||| Sbjct 19043 AACACCTGGCTCCCCAATTAAAACCGGATTGTTTTTCGTTTTACGTGAAAGA 18992 >seq4 Length=425142 Score = 100 bits (110), Expect = 6e-16 Identities = 174/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Minus Query 6111 TTGTTCTTTTACTTGTTCAACGTGGTTTTTATAAATGTGGCAATCACCACCATTCCA--A 6168 ||| | || ||||||||||| || ||| |||||||||| ||||||| ||| | | Sbjct 260052 TTGCTTTTCTACTTGTTCAAAATGATTTGTATAAATGTGTGCATCACCA--ATTGTATGA 259995 Query 6169 ATAAATTCACCAACATCTAAACCCGTAATT-TGTGCAATCATATGAGTTAGTAGTGAATA 6227 | |||||| || || || || ||| | | |||||||| | ||| ||||||||||| || Sbjct 259994 ACAAATTCTCCCACTTC-AAGTCCGCATTCATGTGCAATTAAATGTGTTAGTAGTGAGTA 259936 Query 6228 ACTACTGATATTAAATGGAACTCCCAAAAATAGATCAGCGGATCTTTGATGTAGAATG-C 6286 ||| || |||||||||| ||| | |||| ||| | |||||||| || | || | Sbjct 259935 ACTTGCAATGTTAAATGGAATTCCAAGGAATATGTCACCACTTCTTTGATATA-ACTGAC 259877 Query 6287 AGCTTAGTTTCCCTTGTACTACACAAAATTGTACAAAGC-TATGACAAGGTGGCAACGTC 6345 | || || || | | ||||| |||| || | | ||| |||||||||| || || | | Sbjct 259876 AAGAAAGCTTTCCATCTGCTACATAAAACTGGA-ATAGCGTATGACAAGGCGGTAAGGCC 259818 Query 6346 ATA 6348 ||| Sbjct 259817 ATA 259815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113752694666360