Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 181 3e-40 seq20 113 1e-19 seq137 104 7e-17 seq478 102 2e-16 seq49 98.7 3e-15 seq100 96.9 1e-14 >seq1 Length=1156483 Score = 181 bits (200), Expect = 3e-40 Identities = 231/313 (74%), Gaps = 5/313 (2%) Strand=Plus/Minus Query 349576 TGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTT 349635 |||||||||||| ||||||||||||||||| | ||||||||||| ||||| || || || Sbjct 597287 TGCTGAAGCATACTTAGGTGAAACAGTAACGAAAGCTGTTATTACAGTACCTGCATACTT 597228 Query 349636 TAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCT 349695 || ||||| ||||| ||||| ||||||||||| | || || || ||| | ||| Sbjct 597227 CAACGATGCAGAGCGTCAAGCAACGAAAGATGCTGGTCGTATCGCTGGTTTAGAAGTTGA 597168 Query 349696 AAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGA 349755 | || ||||| || || || || |||||| |||| || || || | |||| | || Sbjct 597167 GCGTATCATTAACGAGCCAACAGCAGCAGCACTTGCTTACGG--TTTAGAAAAACA-AGA 597111 Query 349756 CCAAGaaaaaaaTATTCTTA-TTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTAC 349814 | ||||| |||| | ||||| | | ||| |||||||| ||||| ||||| ||||| | | Sbjct 597110 CGAAGAACAAAA-AATCTTAGTATATGACTTAGGTGGCGGTACATTTGACGTATCTATCC 597052 Query 349815 TAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTG 349874 | | | ||| || | || ||||||| ||||||||||||| | | |||||||| Sbjct 597051 TTGAGTTAGCAGACGGCACATTCGAAGTTATTTCAACTGCTGGTGACAACCGTCTTGGTG 596992 Query 349875 GAGAAGATTTTGA 349887 | || || ||||| Sbjct 596991 GCGATGACTTTGA 596979 >seq20 Length=154917 Score = 113 bits (124), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | ||||| | || || || ||||| || || ||||| | Sbjct 111 TTTGCATACCACCTCGGAGACGGAGAACCAAGTGCAGCGTCGACTCCTTCTGGATATTGT 170 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| | | || || ||||| || || || || ||||||||||| | || ||||| | Sbjct 171 AATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGT 230 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || || || || || || || || || || |||| || || | Sbjct 231 CTGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGG 290 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| || || || || || || ||||| Sbjct 291 ACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 345 >seq137 Length=57057 Score = 104 bits (114), Expect = 7e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || || || ||||| ||||| || || || || | Sbjct 53220 ACCACCACGCAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGC 53161 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || ||||| || || || || || |||||||| ||||||||||| || || || Sbjct 53160 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGG 53101 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || ||||| || || || || || | || || || || |||| || || | || || Sbjct 53100 GATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGAC 53041 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 || || || | ||||| || || || || || ||||| || |||| Sbjct 53040 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 52994 >seq478 Length=13929 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || ||||| || || ||||| ||||| | | || || ||||| || | Sbjct 457 CAAG-TGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTCGA 399 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||||||||| | || ||||| || |||||||| || || || || || | Sbjct 398 GCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGA 339 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || || || |||| || || | || || || || || | ||||| | Sbjct 338 TCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGC 279 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || || || || || ||||| Sbjct 278 CGGTCAGGGTCTTGACGAAGATTTGCAT 251 >seq49 Length=107377 Score = 98.7 bits (108), Expect = 3e-15 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| || || || ||||| ||||| || || || || | || || || ||||| | Sbjct 55453 GACCAAG-TGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCT 55395 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | || || || || |||||||| ||||||||||| || || || || ||||| || || | Sbjct 55394 CGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTT 55335 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || | || || || || |||| || || | || || || || || | |||| Sbjct 55334 GGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCT 55275 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGC 140735 | || || || || || ||||| || ||| Sbjct 55274 TGCCCGTAAGAGTCTTGACAAAGATTTGC 55246 >seq100 Length=70170 Score = 96.9 bits (106), Expect = 1e-14 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || ||||| || || || || ||||| Sbjct 69957 CATACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATC 70016 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || ||||| || || || || ||||| ||||| |||||||| || || || Sbjct 70017 GGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGG 70076 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || |||||||| || || | || || || || |||| || || | || Sbjct 70077 GGGAATGCCCTCCTTATCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTC 70136 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 || || || || | ||||| || || || || Sbjct 70137 GACCTCGAGCGTGATCGTCTTGCCCGTCAGCGT 70169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515148689697335