Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_028748.2 Length=51366 Score E Sequences producing significant alignments: (Bits) Value seq4 480 3e-131 seq6 123 8e-24 seq2 98.7 3e-16 seq7 95.1 4e-15 seq5 82.4 3e-11 >seq4 Length=425142 Score = 480 bits (532), Expect = 3e-131 Identities = 759/1076 (71%), Gaps = 30/1076 (3%) Strand=Plus/Plus Query 20779 AATGAAAAAGACAATGAAACATATTACTTCGTTCCTTATGATTCTAGTACTTGCTGCTTC 20838 ||||||||| |||| |||| ||| | || |||| | |||| |||| ||| Sbjct 212171 AATGAAAAAACCAATTAAACTATTTAGCTTATTATTTATAACTCTATTACTCTTATTTTC 212230 Query 20839 TTTTGCTACAAGTGCTTTTGCTGATCGAACACTTATTATTCCTGATTTACCAAAACAACC 20898 |||||||| | ||||||| ||| || ||| ||||| | || ||||| |||||| | Sbjct 212231 GTTTGCTACGGCTTCTTTTGCCGATAGAGTACTAATTATCCAAGACTTACCGAAACAAGC 212290 Query 20899 ATACCGTTATGGTGTAGGCGCTTATGAGGGCGTTGTAGCACATTCTACAGCAACTCCAGA 20958 ||| || || ||||| |||||||||||||||||||| |||||| ||||||||| ||||| Sbjct 212291 ATATCGCTACGGTGTGGGCGCTTATGAGGGCGTTGTGGCACATAGTACAGCAACACCAGA 212350 Query 20959 AGCTCCAGCTATTAATATTCAAAAATATGAGTCTCGTACATGGAGAAATGCATTTGTTCA 21018 ||| || || ||||| |||| ||| ||||| || | |||||||||||||||||||| || Sbjct 212351 AGCACCCGCGATTAACATTCGAAATTATGAAGCTAGAACATGGAGAAATGCATTTGTACA 212410 Query 21019 CTATGCAGTCGATTGGGACGAAACAATCCAAATTGCTGATACAAAATACATCGCTTATGG 21078 ||||| || |||||| |||||||| |||||||||| |||| |||||| | |||||||| Sbjct 212411 TTATGCTGTAGATTGGAACGAAACAGTCCAAATTGCCGATATAAAATATGTTGCTTATGG 212470 Query 21079 TGGCGGTCCTGCTGCTAATAAACGATTTGTACATGTAGAGTTATGCGAAAC-AGCGGATT 21137 | || || ||||| |||||| ||||||| || ||||| | | ||||| ||| Sbjct 212471 CGCTGGACCAGCTGCAAATAAAAGATTTGTTCACGTAGAACTTTCTGAAACTAGCAACCC 212530 Query 21138 ATACAAAATTCAAACGCAGCTATGACAAATACGTTAAGTTACTAGCTAAAATCTTACGTG 21197 | | ||||| ||| || || || || || || ||||||| || ||| | Sbjct 212531 AGA-TAAATTTAAATCTTCTTACGAGCGTTATGTAAAACTATTAGCTAAGATTTTAAAAG 212589 Query 21198 ACCGTGGGTTATCTGTAGAAAAAGGATTGTGGACACATAGCGATGTAACTCATTACCTTG 21257 | | ||| | | | ||||| || |||||||||| ||| | ||| | | | | Sbjct 212590 ATAGAGGGATTCATCCAAGCAAAGGTTTATGGACACATAAAGATATTACTTACAAATTAG 212649 Query 21258 GCGGTACGGATCATGAAGATCCAATTGATTACTTAAAGTCTCATGGCGTTTCAGAAGCTC 21317 | || || || || |||||||| ||||||||| | |||||| || |||||| | | Sbjct 212650 GTGGAACTGACCACGAAGATCCGATTGATTACCTTCGCAGTCATGGTGTATCAGAATCAC 212709 Query 21318 AATTTAGAGCAGATGTACAACGAGCATACAATAATTCTAGTGTGGA--TGTTTCTGTTCC 21375 |||| ||||| || || ||| || || | || ||| | ||| | ||| Sbjct 212710 AATTCAGAGCGGACGTGCAAAAGGCGTA-------TGAAG-GTGCAACAGTTACAGTTAA 212761 Query 21376 TGAGAAACCATCTAAACCATCGGAAGTACCAACAGTGGTAACAGA---CGGTATCGCCTA 21432 |||||| ||||||| || ||| || ||| || || | || || Sbjct 212762 ACCAAAACCACAAGAACCATCTCAA-----AAC-GTTGTAGGCGAAACAGGAGTAGCTTA 212815 Query 21433 TATTGAAGGTTACAACGTTAACTTACGTAAAGGACCAGGTACGAGCTATTCTAAAATTCG 21492 |||||| || | ||||| ||| || | | |||||| || | || | || || Sbjct 212816 TATTGATGGATTTAACGTAAACCTAAGAAGTGGACCATCAACAAATCATGGTGTTATCCG 212875 Query 21493 TCAACTAAACAAACCAGAATCTTATATTGTGTGGGCGGAAAAGGATGG--TTGGTTAAAT 21550 |||| |||| ||| |||| | ||| || ||| |||||| | || |||||||||| Sbjct 212876 TCAATTAAATAAAGGAGAAGCATATCAAGTATGG--GGAAAACAAGGGGATTGGTTAAAT 212933 Query 21551 CTTGGTGGGGATCAGTGGATTAAGAACGATCCATCTTATGTGAAGT-TTAATAAGAAAAG 21609 |||||||| | || |||||| | ||| | |||||||| | || | | ||| ||| | Sbjct 212934 CTTGGTGGTAACCAATGGATTTATAACAACCCATCTTACATTAAATATCAATGGGAACAA 212993 Query 21610 CACAGTAGATTC---TTCTATTGTTGGAAAGCGTGTTGTTTCAAAAGTTAACAATCTACG 21666 | || ||| |||| | || ||||| ||||||||||| |||| || | || || Sbjct 212994 ACTACTA-CTTCAAGTTCTGTAGTAGGAAAACGTGTTGTTTCTAAAGCGGACGACCTTCG 213052 Query 21667 TTTCTATGATGCTCCATCTTGGCAGGATAAAGATGTGGCCGGTTCTGTAGATGCAGGGTT 21726 |||||||||| || | || ||| ||||||||||| || || ||||||||| |||| | Sbjct 213053 TTTCTATGATTCTGCTTCCTGGTCTGATAAAGATGTAGCAGGAACTGTAGATGAAGGGCT 213112 Query 21727 AGGATTTACAATTGATGCGAAAGTAAATGTAGATGGTGCACCGCAATATAAAGTTCACAA 21786 |||||||| |||||||| |||||| ||| ||||| |||| ||||| ||||| ||||| Sbjct 213113 TGGATTTACTATTGATGCTAAAGTATCTGTTAATGGTTCACCACAATACAAAGTACACAA 213172 Query 21787 TAGCAAAGGAAAAACATACTATATAACAGCAAGTGAAGCCTATGTGTATGTAAAGT 21842 || || || | ||||||||||||||| ||| |||||||||||||||||| |||| Sbjct 213173 CAGTAAGGGCACAACATACTATATAACTACAAATGAAGCCTATGTGTATGTGAAGT 213228 Score = 98.7 bits (108), Expect = 3e-16 Identities = 73/84 (87%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 50064 ATAGCAATTATCGTAGGCGCTTCCGTGATCTGGGTG-CGTCTTGTTTGTTGTTAAGGAAA 50122 ||||||||||| | ||||||| ||||| ||||| || |||||||||||| |||||||||| Sbjct 184620 ATAGCAATTATAGCAGGCGCTGCCGTGTTCTGGTTGGCGTCTTGTTTGTCGTTAAGGAAA 184679 Query 50123 GATAAGCGCAAACGTGTTGCATTT 50146 | | ||| |||||||||||| ||| Sbjct 184680 GGTCAGCCCAAACGTGTTGCGTTT 184703 Score = 89.7 bits (98), Expect = 2e-13 Identities = 131/182 (72%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 39463 TGTATGATGAAAAAATTAAAGAACCTGTTA-TTACTAACAGGTTCTGTGTACAAGGAGTT 39521 || |||| || |||| |||||| | || |||| ||| | |||| ||||||| || Sbjct 175655 TGCATGAAAAATAAATAAAAGAATCCATTCGTTACAAACGGATTCTTCCTACAAGGTGTG 175714 Query 39522 CAANNNATACAAGGTAACTGGTCCAGAGAAACCTGT-GTATTTCTTGGCTTAATAGTAAT 39580 ||| || |||||||||||| |||||| | | | | | |||||||| | ||| |||| Sbjct 175715 CAAGAAATTCAAGGTAACTGGACCAGAGCACCATTTAGAATTTCTTG---TGATATTAAT 175771 Query 39581 GTATGCGAAGTAAACAATAAAATGAATAAAAGTTAAACGAAATTTTTATTT-AGTAAAAA 39639 |||| | ||| || | | || |||||| | || || |||| ||||||| | |||||| Sbjct 175772 GTATTCCAAGAAATCCAAAAGATGAATGTGAATTGAATAAAATCTTTATTTAAATAAAAA 175831 Query 39640 GA 39641 || Sbjct 175832 GA 175833 Score = 87.8 bits (96), Expect = 6e-13 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 49650 GCATCCATAACGGGTGCTTTTTTCTTTGTTATATAGAAATTACACATTAAA 49700 |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 184129 GCATCCATAACGGGTGCTTTCTTCTTTGTTATATAGAAATTACACATTAAA 184179 Score = 80.6 bits (88), Expect = 9e-11 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 39439 TTAAAATCTTAACAAAATAGTTATTGTATGATGAAAAAATTAAAGAACCTGTTA-TTACT 39497 |||| | |||||||| | |||||||||| ||||| | |||||||| ||| ||| Sbjct 177939 TTAATTTTTTAACAAACTTCGTATTGTATGACCAAAAA-TAAAAGAACCCGTTTGTTATA 177997 Query 39498 AACAGGTTCTGTGTACAAGGAGTTCAANNNATACAAGGTAACTGGTCCAGAGAAACCTGT 39557 ||| | |||| ||||| | ||| || |||||||||||| |||||| | | | Sbjct 177998 AACGGATTCTTCTCTCAAGGTCTGCAAGAAATTCAAGGTAACTGGACCAGAGCCCCATAT 178057 Query 39558 -GTATTTCTTGGCTTAATAGTAATGTATGCGAAGTAAACAATAAAATGAATAAAAGTTAA 39616 | |||||||| | ||| |||||||| | ||| || | | || |||||| | |||| Sbjct 178058 AGAATTTCTTG---TGATATTAATGTATTCAAAGAAATCTAAAAGATGAATGGGAATTAA 178114 Query 39617 ACGAAATTTTTATTT 39631 | |||| |||||| Sbjct 178115 ATAAAATCCTTATTT 178129 >seq6 Length=382643 Score = 123 bits (136), Expect = 8e-24 Identities = 114/141 (81%), Gaps = 5/141 (4%) Strand=Plus/Minus Query 27963 TTTTATaaa-aaaaGACACCCTAAGGTGTCTTCCTCCGACTTGATAACCACTTTAATTTT 28021 ||| ||||| |||||||||||||||||| |||||| ||||||| ||||| |||||||| Sbjct 174178 TTTCATAAAGAAAAGACACCCTAAGGTGCCTTCCTTCGACTTG--AACCATCTTAATTTT 174121 Query 28022 AATAATATATGATGGATCACCATACGAATATTATTTTACCATATTCATCTATTTTATTGT 28081 |||||||||| |||| |||| | | |||||||||||||| || | | ||||||| Sbjct 174120 AATAATATAT--TGGACTCCCATCCAACTATTATTTTACCATGTTAAGTTGTTTTATTCA 174063 Query 28082 TTGATAAATATGGTATTTACC 28102 |||| |||||| || || ||| Sbjct 174062 TTGAGAAATATAGTTTTAACC 174042 Score = 105 bits (116), Expect = 2e-18 Identities = 104/133 (78%), Gaps = 6/133 (5%) Strand=Plus/Plus Query 27963 TTTTATaaaaaa----aGACACCCTAAGGTGTCTTCCTCCGACTTGATAACCACTTTAAT 28018 |||||||||||| ||||||||||||||| ||||||||||||||| |||| ||||| Sbjct 152472 TTTTATAAAAAAGAATAGACACCCTAAGGTGCCTTCCTCCGACTTGA--ACCATCTTAAT 152529 Query 28019 TTTAATAATATATGATGGATCACCATACGAATATTATTTTACCATATTCATCTATTTTAT 28078 ||||||||||| | |||| || | | | ||||||||||||| || | | |||| | Sbjct 152530 TTTAATAATATGTATTGGACTCCCGTCCAACTATTATTTTACCACGTTAAGTTGTTTTGT 152589 Query 28079 TGTTTGATAAATA 28091 | |||| ||||| Sbjct 152590 TTATTGAGAAATA 152602 >seq2 Length=633208 Score = 98.7 bits (108), Expect = 3e-16 Identities = 71/79 (90%), Gaps = 5/79 (6%) Strand=Plus/Plus Query 49280 ATTCACATAGA--CATAT-CCCCTATGTTCGAACGTGAA--TTTCTCCCATCCCCTTTAA 49334 ||||||||| | ||||| ||||| |||| ||||||||| ||||||||||||||||||| Sbjct 47714 ATTCACATACAAACATATACCCCTTTGTTTGAACGTGAAAATTTCTCCCATCCCCTTTAA 47773 Query 49335 TATTTTTATAAGCCGTAAA 49353 ||||||||||||||||||| Sbjct 47774 TATTTTTATAAGCCGTAAA 47792 >seq7 Length=350003 Score = 95.1 bits (104), Expect = 4e-15 Identities = 90/112 (80%), Gaps = 5/112 (4%) Strand=Plus/Plus Query 42116 AAACAATAAAAGAGCAGCTAGCAAAAGCTAACTGCTCATCTCCAAGGGGGAACAAGGAGA 42175 ||| |||||||||||||||||||||||| |||||||| |||| ||| ||| | ||||| Sbjct 297613 AAAAAATAAAAGAGCAGCTAGCAAAAGCCAACTGCTCCTCTCTCAGGAGGA--ATGGAGA 297670 Query 42176 AAGTAACTTAATGGGTTGTCTACAGTATTGACGGAATATTGAGTTTTATTCA 42227 || || | || || |||| ||||||||||||| || |||||||| ||| Sbjct 297671 AA-TACAATCAT--ATTATCTATAGTATTGACGGAACATAGAGTTTTAATCA 297719 >seq5 Length=406804 Score = 82.4 bits (90), Expect = 3e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 21422 GGTATCGCCTATATTGAAGGTTACAACGTTAACTTACGTAAAGGACCAGGTACGAGCTAT 21481 || || || |||||| | ||| || || || ||||| |||||||| ||||| | ||| Sbjct 271783 GGGATTGCTTATATTAACGGTAGTAATGTAAATTTACGAAAAGGACCTGGTACTGGATAT 271842 Query 21482 TCTAAAATTCGTCAACTAAACAAACCAGAATCTTATATTGTGTGGGCGGAAAAGGATGGT 21541 ||||||||| || ||| ||| || || | || | | || |||| Sbjct 271843 GGCGTTATTCGTCAATTAGGGAAAGGAGAGTCCTACAAAGTATTTGGACAATCAAATGGC 271902 Query 21542 TGGTTAAATCTTGGTGGGGATCAGTGGATTAAGAACGATCCATCTTAT 21589 ||||||||||| ||||| |||||||||||| | ||||||||||| ||| Sbjct 271903 TGGTTAAATCTCGGTGGCGATCAGTGGATTTATAACGATCCATCATAT 271950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164238979723520