Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_028764.1 Length=49316 Score E Sequences producing significant alignments: (Bits) Value seq4 475 1e-129 >seq4 Length=425142 Score = 475 bits (526), Expect = 1e-129 Identities = 729/1030 (71%), Gaps = 12/1030 (1%) Strand=Plus/Plus Query 768 TTTATTGACACTATTAGATTGTTATTGGGATAATCCTGTTTGGTTTGCAGAGGATATGTT 827 ||||| || | ||| ||| |||||||||| |||| ||| |||||| ||||||||| | Sbjct 186977 TTTATGGAGATTATC-GATGTTTATTGGGATGATCCGGTTGCGTTTGCCGAGGATATGCT 187035 Query 828 AAATTTTAAAGCTGACAAGTGGCAATCTGATGTTCTGATGGCTTTAGCTCAAACCCCAAA 887 |||| | | || | ||||| | ||||| |||| ||| || |||| ||||| Sbjct 187036 GGGTTTTTATCCGGATGAATGGCAGAGAAAAGTTCTTATGGATTTGGCACAAAGTCCAAA 187095 Query 888 AGTATCTATTAGAAGTGGTCAAGGAGTAGGTAAAACTGGATTAGAAAGCATTGCAACTGT 947 || ||| | | ||||||||| || |||||||| || | || ||| | | | Sbjct 187096 GGTTTCTGTGCGTTCTGGTCAAGGGGTTGGTAAAACAGGTCTTGAGTCAGTTGTAGTTAT 187155 Query 948 ATGGTATTTAAGCACTAGACCTTTTCCGAAAGTAGTTGCTACAGCTCCAACACGACAACA 1007 |||| | || ||| || ||| ||||| || ||||||||| ||| |||| Sbjct 187156 TTGGTTCCTCTGCTGTAGGCCGAATCCAAAAGTTATTTGTACAGCTCCTACAAAGGAACA 187215 Query 1008 ATTATATGACGTACTATGGGCTGAAATAGCTAAATGGCTA--AGTAATAGCAAGGTTGAG 1065 |||| | ||||| |||||||||||||| |||||| || || | ||| ||| | Sbjct 187216 GTTATTTACTGTACTTTGGGCTGAAATAGCGAAATGGTTAGAAGGCAGTGCA--GTTAAA 187273 Query 1066 AAGCTACTTGAGTGGACTAAAACAAAAGTGTATATGAAAGGCTTTGAAGAAAGATGGTGG 1125 || |||||| | |||||||||||| ||| || |||| ||| ||| ||| | |||| Sbjct 187274 AATCTACTTAAATGGACTAAAACACGAGTATACATGATTGGCAGTGAGGAACGTTGGTTT 187333 Query 1126 GCTACAGCTAGAACAGCAGTAAAGCCCGAGAATATGCAAGGTTTTCATGAAGATTATATG 1185 ||||| |||||||| ||| ||||| ||||| |||||||| ||||| ||||| |||||| Sbjct 187334 GCTACTGCTAGAACGGCAACGAAGCCGGAGAACATGCAAGGATTTCACGAAGACTATATG 187393 Query 1186 TTATTTGTTGTTGATGAAGCTTCGGGAGTTGCTGACCCCATTATGGAAGCTATATTGGGA 1245 |||||||| |||||||||||| || | || || || ||||||||||||||| | || Sbjct 187394 TTATTTGTATGTGATGAAGCTTCTGGTATAGCAGATCCTATTATGGAAGCTATACTCGGT 187453 Query 1246 ACATTATCAGGTGCAGAAAATAAGCTTCTTTTATGCGGAAACCCAACTAGAACGAGTGGA 1305 || ||||| |||||||||||||| | | ||||| ||||||||||| ||||| || || Sbjct 187454 ACTTTATCTGGTGCAGAAAATAAATTGTTCTTATGTGGAAACCCAACAAGAACAAGCGGT 187513 Query 1306 ACGTTTTACGATAGCCATAATAGAGACAGAGATTTATATAAAACATTTAAAGTATCTTCT 1365 ||||| ||| |||||| | ||||||||||||||||||| | |||||||||| Sbjct 187514 GTATTTTATGATTCTCATAATCGTGACAGAGATTTATATAAAATACATAAAGTATCTAGC 187573 Query 1366 TTAGATAGCCCTAGAACATCAAAAGATAATATTGAAATGCT-AAAAAGAAAGTACCATGA 1424 |||||||||||| |||| ||||| ||||| ||| | | ||||||||| || ||| Sbjct 187574 TTAGATAGCCCTCGAACCAGTAAAGACAATATAGAAGTATTGAAAAAGAAA-TATGGTGA 187632 Query 1425 AGGTTCTGACCCTTGGCGTGTTAGAGTTCTTGGAGAATTTCCAAAAGGTGAAAGTGATTC 1484 ||||| ||| ||||||||| | || ||||| |||||||| |||| ||| ||| | Sbjct 187633 GGGTTCAGACGTTTGGCGTGTACGTGTACTTGGTGAATTTCCTAAAGCAGAAGCAGATGC 187692 Query 1485 TTTAATATCTTTAGAAGCTGTTGAAACAAGCA-CAATAAGAGAAGTGAATATATCTAATG 1543 || || | |||||| ||| | | |||||| || | ||||| | | | || Sbjct 187693 ATTTATCCCGTTAGAAATTGTAG-AGCAAGCAGCATCTTGTAAAGTGGA---GCCGACTG 187748 Query 1544 ACTATATATTAAATATAGGTGCAGATATAGCAAGATATGGTGACGATGAAACTATAATAG 1603 | | | | | |||||| || | ||| ||| |||||| |||||||| |||| | Sbjct 187749 GTGAAACACTTGACTTAGGTGTTGACGTTGCACGATTTGGTGATGATGAAACCGTAATTG 187808 Query 1604 CTCCACGAATAGGTGGAAAAGTGTTTGATTTATTAACTTATTCTAAAAAAGACACAATGG 1663 ||||| | ||||| ||||| ||| | ||||||| | | |||| |||| || |||| Sbjct 187809 CTCCAAGGATAGGAAATAAAGTCTTTAAATTATTAAACCACTATAAACAAGATACTATGG 187868 Query 1664 AAACTGTAGGAAATATATTAAGAGCAGTTGATAAATTTAAAAGCATGTATCATCAAATCA 1723 |||||| || | |||| | | || | | ||| | | | ||| | || | | Sbjct 187869 AAACTGCTGGCCACGTATTGAAATTAGCTAAGGAATACATAGCAAAGTACAAGCAGTTAA 187928 Query 1724 ACAGAGTAAAAATAAAAACGGATGATGATGGTTTGGGTGCAGGTGTTACAGACAGATTAA 1783 | ||||| | |||||| |||||| |||| | |||| |||||||| |||||||| | Sbjct 187929 AAAGAGTTGATATAAAAGTCGATGATAGTGGTGTTGGTGGTGGTGTTACGGACAGATTGA 187988 Query 1784 AAGAGGTTAT 1793 |||| ||||| Sbjct 187989 AAGAAGTTAT 187998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157679403889020