Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_028841.1 Length=44952 Score E Sequences producing significant alignments: (Bits) Value seq3 288 3e-73 >seq3 Length=500241 Score = 288 bits (318), Expect = 3e-73 Identities = 361/491 (74%), Gaps = 6/491 (1%) Strand=Plus/Plus Query 19539 AAGGAGAAGCCCAATGATGGAAATCAGACAAATGTTAGTAGACCCAAGTAAATATGGCAT 19598 ||||||| || | |||||||| ||| ||| ||||| || |||||||||||||| || Sbjct 210 AAGGAGATAATCAGTAATGGAAATTAGAAAAAAATTAGTGGATCCAAGTAAATATGGTAT 269 Query 19599 TAAATGCCCGAATAAAATGGCACCGAAATATATTACGTTTCACAACACGTCCAATGATGC 19658 || || || |||| |||| |||| ||| || || | || || |||| ||||||||| Sbjct 270 AAAGTGTCCCAATACAATGACACCAGAATTCATCACAGTACATAATACGTACAATGATGC 329 Query 19659 TCCTGCAGAAAATGAGATCCGTTATATGATCGGGAATAATAATGAGGTTTCGTTCCACGT 19718 | |||||||||||||| |||||||| |||||||||||| || ||||| || || Sbjct 330 ATCAGCAGAAAATGAGATATCGTATATGATTGGGAATAATAATTCAGTGTCGTTTCATGT 389 Query 19719 TGCTGTGGACGATAAGGAAGCTGTTCAGGGCATTCCTTTTGATCGTAATGCCTGGCATTG 19778 ||| || || || || ||||| || || || |||| |||||||||||||| |||||| Sbjct 390 TGCAGTAGATGACAAAGAAGCAGTACAAGGTATTCTGTTTGATCGTAATGCTTGGCATGC 449 Query 19779 TGGAGACGGGAACGGAACAGGTAACCGTCAGTCCATCGGCGTAGAGATTTGCTATTC-CA 19837 || || || ||||||| ||||| ||| | || ||||| || || ||||||||||| | Sbjct 450 AGGTGATGGTAACGGAAATGGTAATCGTAAATCTATCGGAGTGGAAATTTGCTATTCTCT 509 Query 19838 AGTCGGGCGGAAGCCGATATTATAAGGCCGAGGACAATGCGGCTATTGTCATTGCCCAAC 19897 | ||| || | ||||||| ||||| ||||| ||||| || ||||| ||||| || Sbjct 510 AAGCGGTGGGGA-TAGATATTACAAGGCGGAGGATAATGCAGCAATTGTTATTGCTCAGT 568 Query 19898 TAATGAAACAGTTTTGCATTCCTATTGGAAATGTGGTTCCACATCAGCATTGGAGTGGTA 19957 |||||||||| || || || ||| | ||||| | ||||| | |||||||| | Sbjct 569 TAATGAAACAATTCAATATACCGATTAGTAATGTACGTACACATAAATCGTGGAGTGGAA 628 Query 19958 AATACTGCCCGCACAGAATGTTAGATGAGGGAAGAAT--ACCAAGTTTTATAGAGAGGAT 20015 | | ||||| || ||||| | ||||| |||||| | | ||| || || |||| ||| Sbjct 629 AGCATTGCCCACATCGAATGCTCGATGAAGGAAGAGTGGATCAA--TTCATTGAGAAGAT 686 Query 20016 CAAACAAGCAT 20026 || |||||| Sbjct 687 AAACAAAGCAT 697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143715506844260