Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_028887.1 Length=167431 Score E Sequences producing significant alignments: (Bits) Value seq8 172 6e-38 seq6 134 1e-26 seq361 132 5e-26 seq16 129 6e-25 >seq8 Length=318055 Score = 172 bits (190), Expect = 6e-38 Identities = 173/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 46206 ACAGTTCTAGCTACAGCATATACATCTCATCCTAGTGAAAACGGTGGTACATACGGAGGA 46265 |||||| ||||||||||||||||| |||| || || ||||||||||| ||||| || || Sbjct 28544 ACAGTTGTAGCTACAGCATATACAGCTCACCCGAGCGAAAACGGTGGCACATATGGCGGC 28485 Query 46266 CAAGTGTTAACTGCTACAGGGTTTAACTTAAGTAAAAATCCAAACGCTAAAGTTATCGCA 46325 | || |||||||| | || | | |||| | |||||||| ||| | ||||| Sbjct 28484 CGTGTATTAACTGCAATGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGCT 28425 Query 46326 GTAGACCCAAGAGTAATTCCATTAGGCTCTAAAGTATACGTAGAAGGATACGGAGAAGCA 46385 || ||||| | |||||| |||||||| |||||||||| |||||||| ||||||||||| Sbjct 28424 GTTGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGCT 28365 Query 46386 ATGGCTCTTGACACTGGCGGTGCCATAAAAGGAAACAGAATCGAT 46430 || ||| || ||||| ||||| || ||||| ||| | || ||| Sbjct 28364 ATCGCTGGAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGAT 28320 >seq6 Length=382643 Score = 134 bits (148), Expect = 1e-26 Identities = 193/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 46209 GTTCTAGCTACAGCATATACATCTCATCCTAGTGAAAACGGTGGTACATACGGAGGACAA 46268 ||| |||| ||||| || ||| | |||| |||||| ||| || | || | ||| Sbjct 338947 GTTGTAGCAACAGCTTACACAGCAGATCCACTTGAAAATGGTTATAAAGCAGGCGACCAA 339006 Query 46269 GTGTTAACTGCTACAGGGTTTAACTTAAGTAAAAATCCAAACGCTAAAGTTATCGCAGTA 46328 || | | ||| ||| ||||||| ||||||||| ||| | || ||||| Sbjct 339007 GTAAAATCAGCTTTAGGCCACAACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTT 339066 Query 46329 GACCCAAGAGTAATTCCATTAGGCTCTAAAGTATACGTAGAAGGATACGGAGAAGCAATG 46388 || ||||| || ||||||||||| || ||||||| || ||||| ||||||| |||||| Sbjct 339067 GATCCAAGTGTCATTCCATTAGGTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATC 339126 Query 46389 GCTCTTGACACTGGCGGTGCCATAAAAGGAAACAGAATCGATGTATTGATGCCATCTAAA 46448 ||| ||| ||||| || || || ||||| || | |||||| || || |||||| |||| Sbjct 339127 GCTGGTGATACTGGTGGAGCTATTAAAGGTAATAAAATCGACGTTTTAATGCCAGATAAA 339186 Query 46449 TCTCAATCTAGCGACTGGGGAAGAAAAACAGT 46480 | ||| || ||||||| | |||||||| Sbjct 339187 GGTTCATCAAGTAGCTGGGGACGTAAAACAGT 339218 >seq361 Length=20807 Score = 132 bits (146), Expect = 5e-26 Identities = 170/234 (73%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 46202 AATTACAGTTCTAGCTACAGCATATACATCTCATCCTAGTGAAAACGGTGGTACATACGG 46261 ||||||||| ||| || ||||||||| | |||| ||||| || |||| | || || Sbjct 1057 AATTACAGTAGAAGCGACGGCATATACAGCAGATCCGAGTGAGAA---TGGTTCGTATGG 1113 Query 46262 AGGACAAGTGTTAACTGCTACAGGGTTTAACTTAAGTAAAAATCCAAACGCTAAAGTTAT 46321 || | || |||||||| | ||| | | |||| ||||||||| ||||| || Sbjct 1114 TGGTCGTGTATTAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAAT 1173 Query 46322 CGCAGTAGACCCAAGAGTAATTCCATTAGGCTCTAAAGTATACGTAGAAGGATACGGAGA 46381 || || || || | ||||||||| | || || ||||||| ||||||||||| ||||| Sbjct 1174 TGCTGTTGATCCGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGA 1233 Query 46382 AGCAATGGCTCTTGACACTGGCGGTGCCATAAAAGGAAACAGAATCGATGTATT 46435 ||| || ||| ||||| || ||||| || |||||||| | || |||||||| Sbjct 1234 AGCGATTGCTGGAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGTATT 1287 >seq16 Length=199848 Score = 129 bits (142), Expect = 6e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 46289 TAACTTAAGTAAAAATCCAAACGCTAAAGTTATCGCAGTAGACCCAAGAGTAATTCCATT 46348 ||| |||| | |||||||||| ||| | || || ||||| ||| || || ||||| Sbjct 160270 TAATTTAACTGCAAATCCAAACATGAAATTAATTGCTGTAGATCCATCTGTTATCCCATT 160329 Query 46349 AGGCTCTAAAGTATACGTAGAAGGATACGGAGAAGCAATGGCTCTTGACACTGGCGGTGC 46408 ||| |||| ||||| ||||||||||| ||| |||||| ||| || ||||| |||| Sbjct 160330 AGGTTCTACTGTATATGTAGAAGGATATGGAACAGCAATTGCTGGAGATACTGGTAGTGC 160389 Query 46409 CATAAAAGGAAACAGAATCGATGTATTGATGCCATCTAAATCTCAATCTAGCGACTGGGG 46468 |||||||| | | || ||| |||| |||||| | | ||||| ||| |||||||| Sbjct 160390 AATAAAAGGGCATATCATTGATCTATTAATGCCAAATTCAGCTCAAGCTAATGACTGGGG 160449 Query 46469 AAGAAAAACAGTACAAGTAACAATCCTAAATTAA 46502 |||| |||||| |||| | ||| |||| ||| Sbjct 160450 TAGAAGAACAGTTAAAGTTAAAATTTTAAACTAA 160483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535614742240200