Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_028890.1 Length=162486 Score E Sequences producing significant alignments: (Bits) Value seq8 163 3e-35 seq7 132 5e-26 seq2232 107 2e-18 seq6 98.7 1e-15 seq2763 96.9 4e-15 seq16 89.7 5e-13 seq1 84.2 2e-11 >seq8 Length=318055 Score = 163 bits (180), Expect = 3e-35 Identities = 168/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42630 AGCTACTGCTTATACACCACATCCGAGTGAAAATGGTGGTACATACGGTGGACAAGTATT 42689 |||||| || |||||| | || ||||| ||||| ||||| ||||| || || | ||||| Sbjct 28536 AGCTACAGCATATACAGCTCACCCGAGCGAAAACGGTGGCACATATGGCGGCCGTGTATT 28477 Query 42690 AACAGCTACTGGGTT-TAACTTAAGTAAGAATCCAAACGCACGAGTTATTGCTGTAGACC 42748 ||| || | ||||| | | |||| | ||||||||| | | || ||||| |||| Sbjct 28476 AACTGCAA-TGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGCTGTTGACC 28418 Query 42749 CACGAGTAATTCCATTAGGTTCTAGAGTATACGTAGAAGGCTACGGAGAAGCAATGGCTC 42808 | |||||| |||||||| |||| ||||| |||||||| ||||||||||| || ||| Sbjct 28417 CGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGCTATCGCTG 28358 Query 42809 TAGACACTGGCGGTGCAATCAAAGGTAACCGTATTGA 42845 ||| ||||| |||||||| ||||||||||||||||| Sbjct 28357 GAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGA 28321 >seq7 Length=350003 Score = 132 bits (146), Expect = 5e-26 Identities = 161/219 (74%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 42630 AGCTACTGCTTATACACCACATCCGAGTGAAAATGGTGGTACATACGGTGGACAAGTATT 42689 ||| || || ||||| | |||| |||||||||||| ||||| ||||||| || || Sbjct 229000 AGCGACAGCGTATACTGCTGATCCAAGTGAAAATGGT---ACATATGGTGGACGCGTTTT 229056 Query 42690 AACAGCTACTGGGTTTAACTTAAGTAAGAATCCAAACGCACGAGTTATTGCTGTAGACCC 42749 ||| || | ||| | | |||| ||||| || || |||| || || ||||| Sbjct 229057 AACTGCGATGGGGCATGATTTAACGGCAAATCCGAATATGAGAATTATCGCAGTTGACCC 229116 Query 42750 ACGAGTAATTCCATTAGGTTCTAGAGTATACGTAGAAGGCTACGGAGAAGCAATGGCTCT 42809 |||||| |||||||| |||| ||||| ||||||||||| |||||||| || ||| Sbjct 229117 GAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAGAAGCGATCGCTGG 229176 Query 42810 AGACACTGGCGGTGCAATCAAAGGTAACCGTATTGACGT 42848 || ||||| ||||||| |||||||| |||||||| || Sbjct 229177 TGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGT 229215 >seq2232 Length=716 Score = 107 bits (118), Expect = 2e-18 Identities = 109/140 (78%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 27032 CCTGGCTTCCAACCAGGGGAG-GTCGGTTCGATTCCGACATGTCCCTCCAATACGCCTTC 27090 |||| ||| ||| |||||| | ||||||||| ||| ||| || ||| | ||| | Sbjct 405 CCTGCCTTACAAGCAGGGGGTCGGCGGTTCGATCCCGTCATCCTCCACCATTTAGCCGAC 346 Query 27091 TTAGCTCAGTTGGTAGAGCGATTGACTTGTAATCAATAGGTCGTGGGTTCGAATCCTACA 27150 |||||||| |||||||||| | ||||||||||||| ||||| | |||||| | |||| | Sbjct 345 TTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAGGTTGGGGGTTCAAGTCCTCTA 286 Query 27151 GTCGGCACCATAA--CATGG 27168 |||||||||| || ||||| Sbjct 285 GTCGGCACCAGAAATCATGG 266 >seq6 Length=382643 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 42630 AGCTACTGCTTATACACCACATCCGAGTGAAAATGGTGGTACATACGGTGGACAAGTATT 42689 ||| || ||||| ||| || |||| |||||||||| || | || | |||||| Sbjct 338952 AGCAACAGCTTACACAGCAGATCCACTTGAAAATGGTTATAAAGCAGGCGACCAAGTAAA 339011 Query 42690 AACAGCTACTGGGTTTAACTTAAGTAAGAATCCAAACGCACGAGTTATTGCTGTAGACCC 42749 | ||||| || ||||||| ||||||||| | | ||||| || || || Sbjct 339012 ATCAGCTTTAGGCCACAACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTTGATCC 339071 Query 42750 ACGAGTAATTCCATTAGGTTCTAGAGTATACGTAGAAGGCTACGGAGAAGCAATGGCTCT 42809 | | || |||||||||||||| | ||||| || ||||| ||||||| |||||| ||| Sbjct 339072 AAGTGTCATTCCATTAGGTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATCGCTGG 339131 Query 42810 AGACACTGGCGGTGCAATCAAAGGTAA 42836 || ||||| || || || |||||||| Sbjct 339132 TGATACTGGTGGAGCTATTAAAGGTAA 339158 >seq2763 Length=485 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 27055 CGGTTCGATTCCGACATGTCCCTCCAATACGCCTTCTTAGCTCAGTTGGTAGAGCGATTG 27114 ||||||||| ||| ||| || ||| | ||| ||||||||| |||||||||| | || Sbjct 292 CGGTTCGATCCCGTCATCCTCCACCATTTAGCCGACTTAGCTCAATTGGTAGAGCAACTG 351 Query 27115 ACTTGTAATCAATAGGTCGTGGGTTCGAATCCTACAGTCGGCACCA 27160 ||||||||||| ||||| | |||||| | |||| ||||||||||| Sbjct 352 ACTTGTAATCAGTAGGTTGGGGGTTCAAGTCCTCTAGTCGGCACCA 397 >seq16 Length=199848 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 27080 AATACGCCTTCTTAGCTCAGTTGGTAGAGCGATTGACTTGTAATCAATAGGTCGTGGGTT 27139 |||||||| ||||||||| |||||||||| | ||||||||||||| ||||| | ||||| Sbjct 893 AATACGCCGGCTTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAGGTTGGGGGTT 952 Query 27140 CGAATCCTACAGTCGGCACCAT 27161 | | |||| || ||||||||| Sbjct 953 CAAGTCCTCTAGCCGGCACCAT 974 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 42705 TAACTTAAGTAAGAATCCAAACGCACGAGTTATTGCTGTAGACCCACGAGTAATTCCATT 42764 ||| |||| | ||||||||| | | ||||||||||| ||| || || ||||| Sbjct 160270 TAATTTAACTGCAAATCCAAACATGAAATTAATTGCTGTAGATCCATCTGTTATCCCATT 160329 Query 42765 AGGTTCTAGAGTATACGTAGAAGGCTACGGAGAAGCAATGGCTCTAGACACTGGCGGTGC 42824 |||||||| ||||| |||||||| || ||| |||||| ||| ||| ||||| |||| Sbjct 160330 AGGTTCTACTGTATATGTAGAAGGATATGGAACAGCAATTGCTGGAGATACTGGTAGTGC 160389 Query 42825 AATCAAAGG 42833 ||| ||||| Sbjct 160390 AATAAAAGG 160398 >seq1 Length=1156483 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 27090 CTTAGCTCAGTTGGTAGAGCGATTGACTTGTAATCAATAGGTCGTGGGTTCGAATCCTAC 27149 ||||||||| |||||||||| | ||||||||||||| ||||| | |||||| | |||| Sbjct 1155833 CTTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAGGTTGGGGGTTCAAGTCCTCT 1155774 Query 27150 AGTCGGCACCA 27160 ||||||||||| Sbjct 1155773 AGTCGGCACCA 1155763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519791819261200