Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_028944.1 Length=162252 Score E Sequences producing significant alignments: (Bits) Value seq7 147 2e-30 seq361 132 5e-26 seq6 131 2e-25 seq16 129 6e-25 seq8 122 9e-23 seq5 109 6e-19 >seq7 Length=350003 Score = 147 bits (162), Expect = 2e-30 Identities = 205/285 (72%), Gaps = 7/285 (2%) Strand=Plus/Plus Query 47577 AGCAACAGCATATACTGCCGACCCAGCAGAGAATGGCGGTACGTACGGTGGACGAGTACT 47636 ||| ||||| |||||||| || ||| || ||||| ||| || |||||||| || | Sbjct 229000 AGCGACAGCGTATACTGCTGATCCAAGTGAAAATGG---TACATATGGTGGACGCGTTTT 229056 Query 47637 AACAGCTACAGGGTTTGACTTAACAGCAAATCC--ATCAGCTAAAGTTATCGCAGTTGAC 47694 ||| || | ||| ||| ||||| |||||||| || | || |||||||||||||| Sbjct 229057 AACTGCGATGGGGCATGATTTAACGGCAAATCCGAATATGAGAA--TTATCGCAGTTGAC 229114 Query 47695 CCACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCA 47754 || |||||| |||||||| |||||||| |||||||| || ||| ||| || || Sbjct 229115 CCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAGAAGCGATCGCT 229174 Query 47755 TCAGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCT 47814 |||||||| | || || ||||| ||||| || ||||| |||||| ||| ||| | Sbjct 229175 GGTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGTTTTAATGGGTTCAAAAAGT 229234 Query 47815 CAGTCTAGTAACTGGGGTGTACGAACAGTAAAAGTAACAATCTTA 47859 | ||| || ||||| || ||| || ||||| | ||| ||| Sbjct 229235 AAAGCTATGAATTGGGGAAGACAAACTGTTAAAGTGAAAATTTTA 229279 >seq361 Length=20807 Score = 132 bits (146), Expect = 5e-26 Identities = 164/224 (73%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 47576 AAGCAACAGCATATACTGCCGACCCAGCAGAGAATGGCGGTACGTACGGTGGACGAGTAC 47635 |||| || |||||||| || || || |||||||| | |||| ||||| || ||| Sbjct 1068 AAGCGACGGCATATACAGCAGATCCGAGTGAGAATGG---TTCGTATGGTGGTCGTGTAT 1124 Query 47636 TAACAGCTACAGGGTTTGACTTAACAGCAAATCCATCAGCTAAAGTTATCGCAGTTGACC 47695 |||| || | ||| ||| ||||||||||||||| ||||| || || ||||| | Sbjct 1125 TAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAATTGCTGTTGATC 1184 Query 47696 CACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCAT 47755 | ||||||||| | || || ||||| ||||||||||| ||| ||| ||||| Sbjct 1185 CGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGAAGCGATTGCTG 1244 Query 47756 CAGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTA 47799 ||| || ||||| || || ||||||||||| || ||||||||| Sbjct 1245 GAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGTATTA 1288 >seq6 Length=382643 Score = 131 bits (144), Expect = 2e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 47654 ACTTAACAGCAAATCCATCAGCTAAAGTTATCGCAGTTGACCCACGAGTAATTCCATTAG 47713 |||||||||| |||||| ||| | || |||||||| ||| | || |||||||||| Sbjct 339029 ACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTTGATCCAAGTGTCATTCCATTAG 339088 Query 47714 GCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCATCAGATACTGGTGGAGCTA 47773 | || ||||| || ||||| |||||| |||||| || |||||||||||||||| Sbjct 339089 GTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATCGCTGGTGATACTGGTGGAGCTA 339148 Query 47774 TCAAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCTCAGTCTAGTAACTGGGG-T 47832 | ||||| ||| |||||| || |||||||| |||| | || |||| |||||| Sbjct 339149 TTAAAGGTAATAAAATCGACGTTTTAATGCCAGATAAAGGTTCATCAAGTAGCTGGGGAC 339208 Query 47833 GTACGAACAGTAAAAGTAACAATCTTAAACTAGT 47866 ||| |||||| | ||| | | | |||||||||| Sbjct 339209 GTA-AAACAGTTACAGTTAAAGTATTAAACTAGT 339241 >seq16 Length=199848 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 47656 TTAACAGCAAATCCATCAGCTAAAGTTATCGCAGTTGACCCACGAGTAATTCCATTAGGC 47715 ||||| ||||||||| ||| | || || || || ||| || || |||||||| Sbjct 160274 TTAACTGCAAATCCAAACATGAAATTAATTGCTGTAGATCCATCTGTTATCCCATTAGGT 160333 Query 47716 TCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCATCAGATACTGGTGGAGCTATC 47775 |||| || ||||||||||||| |||||||||||||| |||||||||| | || || Sbjct 160334 TCTACTGTATATGTAGAAGGATATGGAACAGCAATTGCTGGAGATACTGGTAGTGCAATA 160393 Query 47776 AAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCTCAGTCTAGTAACTGGGGTGTA 47835 ||||| || || ||| |||||||||| | | |||| ||| | |||||||| | Sbjct 160394 AAAGGGCATATCATTGATCTATTAATGCCAAATTCAGCTCAAGCTAATGACTGGGGTAGA 160453 Query 47836 CGAACAGTAAAAGTAACAATCTTAAACTA 47864 ||||||| ||||| | ||| |||||||| Sbjct 160454 AGAACAGTTAAAGTTAAAATTTTAAACTA 160482 >seq8 Length=318055 Score = 122 bits (134), Expect = 9e-23 Identities = 163/224 (73%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 47577 AGCAACAGCATATACTGCCGACCC-AGCAGAGAATGGCGGTACGTACGGTGGACGAGTAC 47635 ||| ||||||||||| || |||| ||| || || || || || || || || || ||| Sbjct 28536 AGCTACAGCATATACAGCTCACCCGAGC-GAAAACGGTGGCACATATGGCGGCCGTGTAT 28478 Query 47636 TAACAGCTACAGGGTTTGACTTAACAGCAAATCCATCAGCTAAAGTTATCGCAGTTGACC 47695 |||| || | || ||| ||||| || |||||| ||| | ||||| ||||||| Sbjct 28477 TAACTGCAATGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGCTGTTGACC 28418 Query 47696 CACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCAT 47755 | |||||| |||||||| |||||||| |||||||| |||||| ||| || || Sbjct 28417 CGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGCTATCGCTG 28358 Query 47756 CAGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTA 47799 |||||||||||| || || ||||| || || || ||| | ||| Sbjct 28357 GAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGATATCTTA 28314 >seq5 Length=406804 Score = 109 bits (120), Expect = 6e-19 Identities = 284/426 (67%), Gaps = 8/426 (2%) Strand=Plus/Plus Query 33935 TTTATCTTGATGGTAAAAATAAATATTACAACACATGGAATAAGACAGCTATAAAAGACG 33994 ||||| | || ||||||||||||||||| ||||| ||||| || ||| |||||||| Sbjct 286186 TTTATTTAGACGGTAAAAATAAATATTATAACACTTGGAACAAAACACAAATAAAAGATA 286245 Query 33995 GTGTCGTTCTCAACTGGACAGGTTCGCATAAAGGTGTGGGTATCCGTTTCTACTCTGGAG 34054 || |||| ||||| | || |||||||| || || ||| ||||||| | Sbjct 286246 TAAATATTATCAATTGGACGGAAACGAATAAAGGTACCGGAATTTCTTTATACTCTGCTG 286305 Query 34055 GAACCGACCACGAGATTTCATTCGTAGATACATCG--AATATCAAACTAGTAGGTTTAAG 34112 ||| || | || ||||| || || || ||| ||||| ||| | ||||| | | Sbjct 286306 GAAAAGAAAATGAAATTTCGTTTGT--TAACTTCGAAAATATTAAAGTTGTAGGAAT-GG 286362 Query 34113 AAAAGGTATTG-AGCTAGAAGCTAAAGCTCC-AGCTACTGGAATGGCTTGGGTGAATGCA 34170 ||| | | || | ||| ||| ||| || ||| || ||| |||||| | ||||| Sbjct 286363 AAACTGGACTGAAATTAGTAGCGAAAAAACCGAGC-ACCGGACAAGCTTGGATAAATGCC 286421 Query 34171 AATCGTTTCGATAAGATATCAATTGAAGATTGCGTAGAGATGATTACGATTGATAGCAGC 34230 |||||||| || | || | ||||| || ||| | |||||| || ||||| Sbjct 286422 AATCGTTTTATGAACTTTTCTTTAGAAGACTGTGTAAATATGATTTATATGGATAGTCAA 286481 Query 34231 GAGACAATCCCGAATGAATGTAGTGGTAATACTTTCTCCAATCTTCAACTACAGCCATCT 34290 | || | || |||||| |||||| ||| || | || |||||| ||||||| || Sbjct 286482 GTAACTACGCCAAATGAAATTAGTGGGAATCAATTTACAAACCTTCAAATACAGCCTTCA 286541 Query 34291 ACCGCAACTACAAAAGTCTTAAAAGTAAGTGGACAGCATAACCGATTCGATGGTATGCTC 34350 | ||| | || | || | |||||||| || ||||| ||| |||| ||| | Sbjct 286542 AATAAAACAAAAAGCATTATACAGGTAAGTGGTCAACATAATGAATTTCATGGGATGGTG 286601 Query 34351 TGGGAT 34356 |||||| Sbjct 286602 TGGGAT 286607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519043070226400