Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_028982.1 Length=137918 Score E Sequences producing significant alignments: (Bits) Value seq12 172 5e-38 >seq12 Length=209919 Score = 172 bits (190), Expect = 5e-38 Identities = 408/603 (68%), Gaps = 19/603 (3%) Strand=Plus/Minus Query 94174 TTGATACTTATGCCCAGTTCTTTGACTGGCAAATGTGGGGAGAAGTACT-CACTAGTAAA 94232 ||||||| ||||| ||||| || |||| | | |||||| |||| | || | | Sbjct 75926 TTGATACGTATGCTCAGTTTTTCGACTTGGACATGTGGATTAAAGTGTTGCAGGATCCAG 75867 Query 94233 TCAGCTTGGGGTTTAATACTTAGCTTAGTAATTCTTGAGGGTTTGTTATCAGCAGATAAC 94292 | | ||||||| ||||| || | || | ||||| || || ||||| || |||||| Sbjct 75866 T-ATCTTGGGGATTAATTGGTACACTTGTTGTACTTGAAGGATTATTATCTGCTGATAAC 75808 Query 94293 GCCCTTGTACTTGCCATCATGGTACGACACTTACCAGAGGAACAACGTAAGAGAGCTTTA 94352 || ||||| | || | |||||| ||| | || || ||| ||||||| | ||| ||| Sbjct 75807 GCACTTGTGTTAGCGGTAATGGTAAAACATCTTCCGGAAGAAAAACGTAAAAAAGCATTA 75748 Query 94353 TTCTATGGACTACTTGGTGCTTACTTCTTCCGATTCCTATT--CATTGGAGTAGGAACTC 94410 ||||||||||| |||| ||||| | ||||| || |||| |||||| | |||| Sbjct 75747 TTCTATGGACTTATTGGAGCTTATGTGTTCCGCTT--TATTGCGATTGGAATCGGAATGT 75690 Query 94411 TGCTAATCAAGTTATGGTATGTTAAACTGATTGGTGCCCTATACC-TGCTGTGGATTGTG 94469 | |||| || ||||||| || ||||| ||||||| || |||| |||| ||| || | Sbjct 75689 TCTTAATTAAATTATGGTGGGTAAAACTTCTTGGTGCACTTTACCTTGCT-TGG-TTATC 75632 Query 94470 ATTGA---CCACTATCG-TAAG----AAGG-GTAAG-GAAGCTGATGAAAACCATGAGAT 94519 | | | | ||| | |||| |||| | ||| |||| || ||| || | || Sbjct 75631 AGTAAAATACTTTATTGATAAGCGTAAAGGTGCAAGTGAAGAAGACGAAGCTCACGGTAT 75572 Query 94520 GAATACAGGTGGGATATTGGTAAAATGGTTCGGTGTATTCTGGGCTACAGTTATCTCTGT 94579 |||| | | | || | | | | ||| ||||| ||||||| || ||| || Sbjct 75571 GAATCAAAATAGTATTCTCTTTAGAATGTTTGGTGTCTTCTGGGGAACGGTTGCGATGGT 75512 Query 94580 TGAAATCATGGATATAGCGTTCTCTGTGGACAGTATCTTAGCAGCACTTGGTGTATCAGA 94639 |||| | |||||||| || |||||||| || || | | || ||| |||||||||| | Sbjct 75511 TGAATTAATGGATATCGCATTCTCTGTAGATAGCGTACTTGCTGCATTTGGTGTATCTAA 75452 Query 94640 ACAGGTTTGGGTACTACTAATTGGTGGTATGTTAGGAATCTTGATGATGCGTGGTGTAGC 94699 | |||||| | ||||| | || || ||| |||| || || |||||||||||| | || Sbjct 75451 TGAAGTTTGGATTTTACTATTAGGCGGAATGCTAGGTATTTTAATGATGCGTGGTATTGC 75392 Query 94700 TCATATCTTCCTATACCTAATGGAGAAGGTACCAGAGCTAGAGAATACTGCATACTTCTT 94759 | | | ||| || | | | ||| | |||||||| || | || |||||| | || Sbjct 75391 TGGTGTATTCTTAAAATTGTTAGAGCGTATTCCAGAGCTTGAAACGACAGCATACATTTT 75332 Query 94760 GAT 94762 || Sbjct 75331 AAT 75329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441179570171600