Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_028983.1 Length=138877 Score E Sequences producing significant alignments: (Bits) Value seq12 167 2e-36 seq1 91.5 1e-13 >seq12 Length=209919 Score = 167 bits (184), Expect = 2e-36 Identities = 462/695 (66%), Gaps = 25/695 (4%) Strand=Plus/Minus Query 94884 TTGATACTTATGCCCAGTTCTTTGACTGGCAAATGTGGGGAGAAGTACT-CACTAGTAAA 94942 ||||||| ||||| ||||| || |||| | | |||||| |||| | || | | Sbjct 75926 TTGATACGTATGCTCAGTTTTTCGACTTGGACATGTGGATTAAAGTGTTGCAGGATCCAG 75867 Query 94943 TCAGCTTGGGGTTTAATACTTAGTTTAGTAATTCTTGAGGGCTTGTTATCAGCAGATAAC 95002 | | ||||||| ||||| || | || | ||||| || || ||||| || |||||| Sbjct 75866 T-ATCTTGGGGATTAATTGGTACACTTGTTGTACTTGAAGGATTATTATCTGCTGATAAC 75808 Query 95003 GCCCTCGTACTTGCCATCATGGTAAGACACTTACCAGAGGAACAACGTAAGAGAGCTTTA 95062 || || || | || | ||||||| ||| | || || ||| ||||||| | ||| ||| Sbjct 75807 GCACTTGTGTTAGCGGTAATGGTAAAACATCTTCCGGAAGAAAAACGTAAAAAAGCATTA 75748 Query 95063 TTCTATGGACTACTTGGTGCTTATTTCTTCCGATTCCTATT--CATTGGAGTAGGAACTC 95120 ||||||||||| |||| |||||| | ||||| || |||| |||||| | |||| Sbjct 75747 TTCTATGGACTTATTGGAGCTTATGTGTTCCGCTT--TATTGCGATTGGAATCGGAATGT 75690 Query 95121 TACTAATCAAGTTATGGTATGTTAAACTGATTGGTGCTCTATA-CTTACTGTGGATTGTA 95179 | |||| || ||||||| || ||||| ||||||| || || ||| || ||| | | Sbjct 75689 TCTTAATTAAATTATGGTGGGTAAAACTTCTTGGTGCACTTTACCTTGCT-TGGTTATCA 75631 Query 95180 ATTGACCAC--TATCG-TAAG----AAGG-GTAAG-GAAGCTGATGAAAACCATGAGATG 95230 | | || ||| | |||| |||| | ||| |||| || ||| || | ||| Sbjct 75630 GTAAAATACTTTATTGATAAGCGTAAAGGTGCAAGTGAAGAAGACGAAGCTCACGGTATG 75571 Query 95231 AATACAGGAGGAATACTAGTAAAATGGTTCGGTGTATTCTGGGCTACAGTTATCTCTGTT 95290 ||| | | || || | | | ||| ||||| ||||||| || ||| ||| Sbjct 75570 AATCAAAATAGTATTCTCTTTAGAATGTTTGGTGTCTTCTGGGGAACGGTTGCGATGGTT 75511 Query 95291 GAAATCATGGACATAGCGTTCTCTGTGGACAGTATTTTAGCAGCACTTGGTGTATCAGAA 95350 ||| | ||||| || || |||||||| || || | | || ||| |||||||||| | Sbjct 75510 GAATTAATGGATATCGCATTCTCTGTAGATAGCGTACTTGCTGCATTTGGTGTATCTAAT 75451 Query 95351 CAGGTTTGGGTACTACTAATTGGGGGTATGTTAGGAATCTTGATGATGCGTGGTGTAGCT 95410 | |||||| | ||||| | || || ||| |||| || || |||||||||||| | ||| Sbjct 75450 GAAGTTTGGATTTTACTATTAGGCGGAATGCTAGGTATTTTAATGATGCGTGGTATTGCT 75391 Query 95411 CACATCTTCCTATACTTAATGGAGAAGGTACCAGAGTTAGAGAATACTGCATACTTCTTG 95470 | ||| || | || | ||| | |||||| | || | || |||||| | || Sbjct 75390 GGTGTATTCTTAAAATTGTTAGAGCGTATTCCAGAGCTTGAAACGACAGCATACATTTTA 75331 Query 95471 ATACTCGCAATTGCAGTTAAGATGGGTGGAAGCGTGTTTGGTC----TACACATCAGTCA 95526 || | ||||||| || | || | || ||| || | | || ||||| Sbjct 75330 ATCTTAATTATTGCAGCAAAAA----TGTTACTGTCTTTAATCGAGATTGAGATTAGTCA 75275 Query 95527 TGAAGTGTTCGTTATTACTTTAGTTGGTGCATTTG 95561 | | | ||| |||||| |||||||| ||||||| Sbjct 75274 TACACTATTCTTTATTATTTTAGTTGTAGCATTTG 75240 >seq1 Length=1156483 Score = 91.5 bits (100), Expect = 1e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 33570 CCTTAGCTCAATTGGTTAGAGCACACGGCTCATAACCGTGCGGTTGTAGGTTCGATTCCT 33629 |||||||||| ||||||||||| ||||||||||||||| |||| |||||||||| |||| Sbjct 561959 CCTTAGCTCAGCTGGTTAGAGCAGACGGCTCATAACCGTCCGGTCGTAGGTTCGAGTCCT 561900 Query 33630 ACAGG 33634 ||||| Sbjct 561899 ACAGG 561895 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 33572 TTAGCTCAATTGGTTAGAGCACACGGCTCATAACCGTGCGGTTGTAGGTTCGATTCCTAC 33631 |||||||| ||||||||||| ||||||||||||||| |||| |||||||||| |||||| Sbjct 1156301 TTAGCTCAGCTGGTTAGAGCAGACGGCTCATAACCGTCCGGTCGTAGGTTCGAGTCCTAC 1156242 Query 33632 A 33632 | Sbjct 1156241 A 1156241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444248161301400