Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_029022.1 Length=46895 Score E Sequences producing significant alignments: (Bits) Value seq8 165 2e-36 seq4 95.1 4e-15 >seq8 Length=318055 Score = 165 bits (182), Expect = 2e-36 Identities = 276/397 (70%), Gaps = 8/397 (2%) Strand=Plus/Plus Query 11090 TAGCATCCAAACATGTTTTTCAAGTGCAGTGTGAATAGCAAGAAGCATATCGCTAGTAGT 11149 |||||||||| | |||||||| ||| | |||| || | || || | || || | Sbjct 197124 TAGCATCCAAGCGTGTTTTTCTAGTTCTGTGTAGATGCCTAGTAGTAGGTCAGATGTCAT 197183 Query 11150 TTCATCATTTTCTTTTTGGGCTATTTCCATTCCGGTTTTAAGCTCACTAACTATAGTGTT 11209 |||||| | | ||| || |||||||| || |||| || || | | || | | Sbjct 197184 TTCATCGTCAGAGTCTTGAGCGATTTCCATGCCTTTTTTCAGTTCGATTAGCATCATTTC 197243 Query 11210 ATAATCACTAATGATTGTTGCAACCATATCTTCTGCAACTTCATTTCCAGTA----GCTT 11265 || || | ||||||| | | ||||| |||||||| ||| ||| ||| |||| Sbjct 197244 GTAGTCTTTCATGATTGCTTCGACCATCCCTTCTGCAGTTTC---TCC-GTATGCTGCTT 197299 Query 11266 CTTTTATAGATGAAATTTCTAAGCATTCTTTCATAGTTGCCACTGGATTACCTCCAATTG 11325 ||| ||||| || | ||||||| |||||||||| ||||| ||||| || || ||||||| Sbjct 197300 CTTGAATAGAAGATAGTTCTAAGTATTCTTTCATTGTTGCTACTGGTTTGCCGCCAATTG 197359 Query 11326 AAAGCTGTCTTTCAGCCAGTTCATCAATATGAAGTGCAGCTTCGTTATAAAGTTCTTCAA 11385 | | ||| || | ||||||||| ||| || | ||| | ||||||||||| | Sbjct 197360 CTAAAATACGTTCTGCAATTTCATCAATGTGAGTAGCTGATTCTGTGTAAAGTTCTTCGA 197419 Query 11386 ATTTTAGATGTAAAGTGAAAAATTGTTGACCTTTAACGAACCAGTGGAAGTTATGAAGTT 11445 |||| ||||| ||||| ||||| | ||||| ||| |||| |||||||| ||||||| Sbjct 197420 ATTTCTCGTGTAATGTGAAGAATTGAGGTCCTTTTACGTACCAATGGAAGTTGTGAAGTT 197479 Query 11446 TAATGTACAATACACTCCAATTAGCGATTTGCTTATT 11482 | || | || || ||||| | || | ||| || || Sbjct 197480 TTGTGAATAAAACGCTCCAGTCTGCTACTTGTTTGTT 197516 >seq4 Length=425142 Score = 95.1 bits (104), Expect = 4e-15 Identities = 284/431 (66%), Gaps = 27/431 (6%) Strand=Plus/Minus Query 11064 TATTGTTATTTACCAAGGAATGATTTTAGCATCCAAACATGTTTTTCAAGTGCAGTGTGA 11123 ||| ||||||| | ||||| |||||||||| ||||| | ||| | || || ||| Sbjct 32684 TATCGTTATTTT---AAGAATGCACTTAGCATCCATACATGCTGTTCTAATGTTGTATGA 32628 Query 11124 ATAGCAAGAAGCATATC-GCTAGTAGTTTCATCATTTTCTTTTTGGGCTATTTCCATTCC 11182 || || | | ||| || ||| | |||||||| ||| || | |||||| || Sbjct 32627 ATTGCTAACAACATGTCAGCTGAT-GTTTCATCGCCAGCTTCACCTGCAACTTCCATACC 32569 Query 11183 GGTTTTAAGCTC---ACTAACTATAGTGTTATAAT-CACTAATGATTGTTGCAACCATAT 11238 ||| | || | ||| | || | || || |||||||| ||| ||||| | Sbjct 32568 TTCTTTTAATTCTTGAATAAGTGCAGAATAATCATTCACTAATGTTTGC----ACCATTT 32513 Query 11239 CTTCTGCAACTTCATTTCCAGTAGCTTCTTTTA---TAGATGAAATTTCTAAGCATTCTT 11295 |||||||| ||| || | || |||| | | |||||| || | | |||||| Sbjct 32512 CTTCTGCAGATTCTTTGCTTGTCCCTTCGCTGACACTAGATG---TTGCGAGATATTCTT 32456 Query 11296 TCATAGTTGCCACTGGATTACCTCCAATTGAAAGCTGT----CTTTCAGCCAGTTCATCA 11351 |||| || || | ||| |||||| | | ||||| | ||| || | |||||| Sbjct 32455 TCATTGTCGCTAATGGTTTACCTTCTA----AAGCTAAAATACGTTCTGCTAACTCATCA 32400 Query 11352 ATATGAAGTGCAGCTTCGTTATAAAGTTCTTCAAATTTTAGATGTAAAGTGAAAAATTGT 11411 |||| | |||| || ||||||| ||||||||||| |||||| || || || ||| Sbjct 32399 ATATACGTTCCAGCCTCATTATAAAACTCTTCAAATTTCTCATGTAATGTAAAGAAGTGT 32340 Query 11412 TGACCTTTAACGAACCAGTGGAAGTTATGAAGTTTAATGTACAATACACTCCAATTAGCG 11471 | ||| | || ||||||| | ||||| ||||| | || || ||| |||| || || Sbjct 32339 GGCCCTGTCACATACCAGTGATAATTATGTAGTTTCACATATAACACATTCCAGTTTGCT 32280 Query 11472 ATTTGCTTATT 11482 | ||||| || Sbjct 32279 ACCTGCTTGTT 32269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149932704818130