Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_029024.1 Length=56505 Score E Sequences producing significant alignments: (Bits) Value seq7 237 6e-58 seq3 120 1e-22 seq6 100 1e-16 seq4 89.7 2e-13 >seq7 Length=350003 Score = 237 bits (262), Expect = 6e-58 Identities = 267/355 (75%), Gaps = 2/355 (1%) Strand=Plus/Plus Query 2426 AGGAGGGGAAAGTATGGGGAAATTAAAGTTCATGAGTTTAGATGAGTTTAATAAGAAAAT 2485 ||||| | ||||||| | |||| | || |||||| |||| || || |||| ||| | Sbjct 61074 AGGAGAGAGAAGTATGAGTGAATTGCATTTTATGAGTATAGAAGAATTAGATAATAAATT 61133 Query 2486 -ACACAATCTCGACAGTGGTATTTACTTAATTACTGACCATAATGACAAAATCGTTTATG 2544 | | ||||| |||||||||||||| || |||| || |||||||||| || |||||| Sbjct 61134 GAAAAAATCT-GACAGTGGTATTTATTTCATTAAAGATTATAATGACAATATTATTTATG 61192 Query 2545 TAGGTAAAGCTTATAAAATAAAAACTAGGGTTAATGCTCATTTTAAGGGTTATTCCAATA 2604 |||| || |||| || ||||||| ||| || ||||||||||| |||||||||||| Sbjct 61193 TAGGCAAGGCTTTTAGTATAAAAAGTAGAGTATTAGCTCATTTTAATAGTTATTCCAATA 61252 Query 2605 CCAGGGATCATGCGCATTTATTTAATAAAGTAGCTTTTATCCTTGAGGATAGTCCACTGA 2664 ||| ||| |||||||||||||||||||| | | || |||| |||||| | | Sbjct 61253 TTGAGGAATATGTCCATTTATTTAATAAAGTAGCGTATCTCATTGAAGATAGTTTGTTAA 61312 Query 2665 AACGCTCTTTATTAGAGATAACTTATATGATTGAACATAAAACAGTGTTGAATAAAGAGG 2724 ||||||| || ||| | | |||||||||||| || ||||| |||| || || ||||| | Sbjct 61313 AACGCTCATTGTTACAAGTTACTTATATGATTAAATATAAACCAGTATTAAACAAAGAAG 61372 Query 2725 TACAAGAGGAGTTTCCAGTTCTATACACTAAGTATATTAAGCAGACGAATCAAAA 2779 ||||| | || || |||| | || ||| | || ||||||||||| ||| |||| Sbjct 61373 TACAAAAAGAATTCCCAGAGTTGTATACTCAATACATTAAGCAGACAAATAAAAA 61427 Score = 179 bits (198), Expect = 1e-40 Identities = 213/287 (74%), Gaps = 9/287 (3%) Strand=Plus/Plus Query 27554 GGTGGAAATTATAGTGAATAAATTTAATAAAGTTGTTACGTATGAATTCGGAACAGCGTT 27613 ||| | ||||||||||||||||| ||| ||||| ||||| |||||||| || | || Sbjct 349318 GGTTGGAATTATAGTGAATAAATATAACAAAGTAGTTACTTATGAATTTGGTGTAAATTT 349377 Query 27614 AGTACCAGAAATGTTAGGAATGATGGATGCTCTTGGGTATGAATCTCGTATTATCTCATA 27673 ||| || || ||| | |||||||||| ||||| ||| ||| || || || Sbjct 349378 AGTTCCTGACATGATTCAAATGATGGATAAGCTTGGATATACTTCTAAAATAATATCTCG 349437 Query 27674 TGGAGATAAACAGGGATTAGTTAGATTTGAAACAGCATATCGCCAAGGGAATGAACTAGA 27733 ||||||||| || || | || || ||||||| ||||| |||||||||||||| || Sbjct 349438 TGGAGATAACCAAGGGCTTGTGTATTTCGAAACAGATTATCGTCAAGGGAATGAACTGGA 349497 Query 27734 TCGAGCAACTGCATGGTTAGATGCGAAAGGTCTTAAATACTACTATACAAAAGAATAGTT 27793 ||||||||| ||||||||| ||||||| ||||||| | ||||||||||| ||||| Sbjct 349498 CAAAGCAACTGCTTGGTTAGATACGAAAGGAATTAAATATTTTTATACAAAAGAGTAGTT 349557 Query 27794 TGATGAACAAAAATAAGAGCCGTCCTGTTGGGCGGCtttttttATTT 27840 || | || |||| ||||||| ||| | ||| |||||||||| Sbjct 349558 TGCTAAATAAAA-----AGCCGTCATGT--GACGG--TTTTTTATTT 349595 Score = 127 bits (140), Expect = 7e-25 Identities = 204/293 (70%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 2962 aaagggataaattaaaaaaagatttaattaaaaTAGCCGGTGGGAAATCGATGTTTTATG 3021 || ||||| | ||||| || | ||| | ||| ||| ||||| ||| | |||||||||| Sbjct 61463 AAGGGGATGAGTTAAAGAATAAATTAGTAAAATTAGTGGGTGGAAAAACTATGTTTTATG 61522 Query 3022 AGATCCTGTCCTTATTGGAAAGTGGATATAATCCTAATCTTTTAGCTGATGCACTTAAGA 3081 | || | || | || | | ||||||||| | || | | || | | | | || | Sbjct 61523 ACATAATTTCTCTGTTAAACAATGGATATAACTATCATGTCCTCGCAAAAGTATTGAACA 61582 Query 3082 TAGAGCTTGCAACTATAAATTTATTTAAAGAAAACAGGAAGAGTTTTCATATACCACGAG 3141 |||| ||| |||| ||| | || | |||||| || | || | || | ||||||| Sbjct 61583 TAGAACTTCAAACTTTAATTATAATAAAAGAACACCGAAATAAATTCCCGATACCACATA 61642 Query 3142 ATCATAAGAGGTTGATAAAACATCAAGACATTATGTATTCATTATCTGGTAAAAAGAATA 3201 || |||| ||| |||||||||||||| || |||||| | |||||||| ||||||||| Sbjct 61643 ATTATAAAAGGACAATAAAACATCAAGATATAATGTATGCTTTATCTGGAAAAAAGAATT 61702 Query 3202 CAGGGAATTCTAGATTAAATCATTTACTTTAAAGTAGCGAACCTGCTGCTTTT 3254 | | | ||| || ||||| || |||||||| ||| || | ||||||| Sbjct 61703 TAAGTACTTCAAGGTTAAACACTTAACTTTAAAATAGTAAATTCGTTGCTTTT 61755 Score = 93.3 bits (102), Expect = 2e-14 Identities = 85/106 (80%), Gaps = 10/106 (9%) Strand=Plus/Plus Query 52102 AAAAATAAA-GAGCAGCTAGCAAAAGCTAACTGCTC-------AGGT--AATGGAGAAAG 52151 ||||||||| ||||||||||||||||| |||||||| ||| |||||||||| Sbjct 297614 AAAAATAAAAGAGCAGCTAGCAAAAGCCAACTGCTCCTCTCTCAGGAGGAATGGAGAAAT 297673 Query 52152 ATTACCATGTCATCTATAGTATTGACGGAATATTGAGTTTTATTCA 52197 | | ||| | ||||||||||||||||||| || |||||||| ||| Sbjct 297674 ACAATCATATTATCTATAGTATTGACGGAACATAGAGTTTTAATCA 297719 >seq3 Length=500241 Score = 120 bits (132), Expect = 1e-22 Identities = 310/467 (66%), Gaps = 24/467 (5%) Strand=Plus/Plus Query 27019 AAAAAAGGAGATGTTGAATAATGGAAATCAAACAAATGTTAGTGCCAAGAAGTCGATACG 27078 |||||||||||| | | |||||||||| | | ||| |||||| |||| ||| | Sbjct 206 AAAAAAGGAGATAATCAGTAATGGAAATTAGAAAAAAATTAGTGGATCCAAGTAAATATG 265 Query 27079 ATGCCTTATGCCCGTATGAGATGAATCCAACAGAA---ATCACATTTCATAACACGTACA 27135 | || || || |||| || ||||| |||||| | ||||| ||||||| Sbjct 266 GTATAAAGTGTCCCAATACAATGA---CACCAGAATTCATCACAGTACATAATACGTACA 322 Query 27136 ACGACGCACCGGCTATAAATGAG----CGTAATAATGTCGCTAACAATAG--CACTGGAA 27189 | || ||| | || ||||||| |||| || | | || |||| || || Sbjct 323 ATGATGCATCAGCAGAAAATGAGATATCGTA-TATGATTGGGAATAATAATTCAGTG--- 378 Query 27190 CATCATTTCATATCGCTGTGGATGATAAAGAAGCTATTCAGTTAATTCCTTTTAACAGAA 27249 || |||||| | || || ||||| |||||||| | || |||| ||| | | | Sbjct 379 --TCGTTTCATGTTGCAGTAGATGACAAAGAAGCAGTACAAGGTATTCTGTTTGATCGTA 436 Query 27250 ATGCATGGCACGCTGGAGATGGTAATGGGAGAGGGAATCGTCATAGTATTGGGGTGGAAA 27309 |||| ||||| || || |||||||| || | || |||||| | ||| || ||||||| Sbjct 437 ATGCTTGGCATGCAGGTGATGGTAACGGAAATGGTAATCGTAAATCTATCGGAGTGGAAA 496 Query 27310 TTTGTTATTCACAATCAGGCGGAGCGAGATATCGCAAGGCTGAATTAAAT---GCAATTG 27366 |||| ||||| | | || || | |||||| |||||| || ||| |||||| Sbjct 497 TTTGCTATTCTCTAAGCGGTGGGGATAGATATTACAAGGCGGAGGATAATGCAGCAATT- 555 Query 27367 AAGTAATCGCCCAATTAATGATTCAGTTTGATATTCCAATCAGTAAAGTTAAGACTCATC 27426 || || || || ||||||| || || |||| || || ||||| || || ||| Sbjct 556 --GTTATTGCTCAGTTAATGAAACAATTCAATATACCGATTAGTAATGTACGTACACATA 613 Query 27427 AAGAGAGAAACGGGAAGTACTGTCCGCATCGAATGTTAGATGAAGGA 27473 || | | | || ||| | || || ||||||||| | ||||||||| Sbjct 614 AATCGTGGAGTGGAAAGCATTGCCCACATCGAATGCTCGATGAAGGA 660 >seq6 Length=382643 Score = 100 bits (110), Expect = 1e-16 Identities = 92/112 (82%), Gaps = 6/112 (5%) Strand=Plus/Plus Query 36024 tttttGTATAAA-GAAAAGACACCCAAAGGTGCCTTCCTCCGACTTGATAACCACTTTAA 36082 ||||| || ||| ||| |||||||| ||||||||||||||||||||| ||||| |||| Sbjct 152471 TTTTTATAAAAAAGAATAGACACCCTAAGGTGCCTTCCTCCGACTTG--AACCATCTTAA 152528 Query 36083 TTTTAATAATATGAGTGTTGGATTCTCATCCAA-TATCATTATATCACATTA 36133 |||||||||||| || ||||| || | ||||| ||| ||| || ||| ||| Sbjct 152529 TTTTAATAATAT--GTATTGGACTCCCGTCCAACTATTATTTTACCACGTTA 152578 Score = 96.9 bits (106), Expect = 1e-15 Identities = 86/105 (82%), Gaps = 7/105 (7%) Strand=Plus/Minus Query 36025 ttttGTATAAAGAAAAGACACCCAAAGGTGCCTTCCTCCGACTTGATAACCACTTTAATT 36084 |||| ||||||||||||||||| ||||||||||||| ||||||| ||||| |||||| Sbjct 174180 TTTTTCATAAAGAAAAGACACCCTAAGGTGCCTTCCTTCGACTTG--AACCATCTTAATT 174123 Query 36085 TTAATAATATGAGTGTTGGATTCTCATCCAA-TATCATTATATCA 36128 ||||||||| | ||||| || ||||||| ||| ||| || || Sbjct 174122 TTAATAATA----TATTGGACTCCCATCCAACTATTATTTTACCA 174082 >seq4 Length=425142 Score = 89.7 bits (98), Expect = 2e-13 Identities = 103/135 (76%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 51983 AAAATAAAAGAGCGGCTAGCAAAAACTGACCGCTCCGTTT-TGACAAAAGATTCCGGGCA 52041 ||||||||||| | ||||||||||||| || |||| ||| | ||||| |||||||| Sbjct 179976 AAAATAAAAGAACAGCTAGCAAAAACTAACTGCTCTTTTTCCAAAAAAAGGTTCCGGGCT 180035 Query 52042 GAAATCACTGCTAAGATAACTGCTTATGGTTAGTATGGTACAAAATCACGATTAGTAT-- 52099 | || ||||| ||||| | ||||||| |||||| |||||||||| || || ||| Sbjct 180036 GCAAACACTGTTAAGAAGGCAGCTTATGAGTAGTAT-GTACAAAATCGTGAATATTATAA 180094 Query 52100 TCAAAAATAAAGAGC 52114 | ||| ||||||| Sbjct 180095 GGATAAAAAAAGAGC 180109 Score = 84.2 bits (92), Expect = 8e-12 Identities = 75/93 (81%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 51026 TATCATGAATTTTTTGGTAAAAATACTGGTAAATGTGTCCAA-ATGGATAGGAGCATTAT 51084 || ||||||| || ||||||||||| ||||||| | ||||| ||| |||| ||||| Sbjct 178562 TAACATGAATGTTGCGGTAAAAATACCGGTAAATTTATCCAATATGTTTAGGGCTATTAT 178621 Query 51085 TTTGAACAAAAACGCTATTTGAGTAGAAAAGGA 51117 || ||| |||||||||||| | |||||||||| Sbjct 178622 TTCTAACCAAAACGCTATTTTATTAGAAAAGGA 178654 Score = 84.2 bits (92), Expect = 8e-12 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 55500 ATATCAATTATCGTAGGCGCTGCCGTGATCTGGGTGGCGTCTTGTTTGTTGTTAAGGAAA 55559 ||| ||||||| | ||||||||||||| ||||| ||||||||||||||| |||||||||| Sbjct 184620 ATAGCAATTATAGCAGGCGCTGCCGTGTTCTGGTTGGCGTCTTGTTTGTCGTTAAGGAAA 184679 Query 55560 G 55560 | Sbjct 184680 G 184680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180682716413030