Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_029048.1 Length=131326 Score E Sequences producing significant alignments: (Bits) Value seq3 156 4e-33 >seq3 Length=500241 Score = 156 bits (172), Expect = 4e-33 Identities = 319/460 (69%), Gaps = 23/460 (5%) Strand=Plus/Minus Query 89505 TAATGCCATTTTTACTAAATTAAGAGTCGTAAAAGATAGATTTCCTCTTCCTATACTTGT 89564 ||| || | ||| |||||||||| || |||||| |||| ||| ||||| || || ||| Sbjct 79190 TAACGCTAATTTCACTAAATTAATAGACGTAAATGATAAATTCCCTCTACCAATTGCTGT 79131 Query 89565 TTTTTCTCCATGCAAATCTTCAAATACC-CTTGTACGACACCCCATTGTTGC-TACTTCA 89622 || ||||||||| | || | | ||| | | |||||||| ||||| || | ||||||| Sbjct 79130 TTCTTCTCCATGTATAT-TAGACATAACACGGGTACGACATCCCAT-GTAACATACTTCA 79073 Query 89623 TAAATATATCTGTTTGGGTCGCACATTTTCCATTTTACATGCTTATTGAAGGTTGCATCT 89682 | |||| ||| ||| | | | ||| ||| ||| || | |||||| Sbjct 79072 C-----TTTCTG-----GTCTTCCATCAT--AATGTAC-TGC--ATTAAACGGAGCATCT 79028 Query 89683 AAATTTAAAAAATTAGGAAAAAATCTTTTAGCTGATA-CTTTACATGCTAATTCATATAA 89741 ||| | |||| ||||| || |||| || ||| | | || || ||||||||||| |||| Sbjct 79027 AAAAATGAAAAGTTAGGGAACAATCGTTCAGCCGTTGTCTCTA-ATGCTAATTCAAATAA 78969 Query 89742 GTCATAATTTCTATCAGTAGGATTATAGTTCACACCTTCTTTCACTTTCCAGATTTGAAT 89801 || || || |||| | | | | |||||||||| ||||| || | |||||||| Sbjct 78968 ATCGTAGTTCGGATCACTTTCTTCAAAATTCACACCTTTTTTCATCTTGAAAATTTGAAT 78909 Query 89802 TGGGAAAATTGGTGTTTCTCCATTTCCGACTCCTTCATAAGTAGATTTTAGTATTTCTCT 89861 || ||||| ||||| || || || || | ||| | | || | ||||| | || | | Sbjct 78908 CGGAAAAATCGGTGTCTCCCCTTTACCAAGTCCAGCTTGTGTCGCTTTTAAAAGTTGTTT 78849 Query 89862 TATTATACA-TCTACCTTCTGCTGAAGTATCTGTACCATAATTTATAGAACTAAACACGA 89920 |||| ||| ||| |||||| ||| |||||||| |||||||| |||||| ||||| | Sbjct 78848 AATTA-ACATTCTTCCTTCTTTTGATGTATCTGTTCCATAATTAATAGAAATAAACGGTA 78790 Query 89921 CCTGATTTCCACCCCTTGAATGAATTGTGTTCATATTATG 89960 | || ||| ||||| ||| || | ||| |||||| Sbjct 78789 CTTGTCCTCCGCCCCTACTATGCATACTATTCGAATTATG 78750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420090520549115