Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_029069.1 Length=165031 Score E Sequences producing significant alignments: (Bits) Value seq7 165 9e-36 seq8 161 1e-34 seq16 149 7e-31 seq6 145 8e-30 seq361 141 1e-28 seq9 125 8e-24 >seq7 Length=350003 Score = 165 bits (182), Expect = 9e-36 Identities = 205/280 (73%), Gaps = 3/280 (1%) Strand=Plus/Plus Query 128580 TAGCTACAGCGTACACAGCAGACCCAGCAGAGAATGGCGGTACATACGGTGGAGTAGTTA 128639 |||| |||||||| || || || ||| || ||||| |||||| |||||| ||| Sbjct 228999 TAGCGACAGCGTATACTGCTGATCCAAGTGAAAATGG---TACATATGGTGGACGCGTTT 229055 Query 128640 AAACAGCAATGGGGCATAACTTATCTGCAAACCCTAGCATGAAAATGGTTGCAGTTGACC 128699 ||| || ||||||||| | ||| | ||||| || | |||| ||| | |||||||||| Sbjct 229056 TAACTGCGATGGGGCATGATTTAACGGCAAATCCGAATATGAGAATTATCGCAGTTGACC 229115 Query 128700 CTAGAGTAATTCCACTTGGTTCTCGTATATATGTAGAAGGATATGGGGAAGCAATCGCGG 128759 | | |||||| ||| | || ||| ||| |||||||| ||||| ||||| ||||| | Sbjct 229116 CGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAGAAGCGATCGCTG 229175 Query 128760 GAGATACTGGTGGAGCAATCAAAGGTAACCGTATCGATGTATTGATGCCATCTAAATCTC 128819 | |||||||| | ||||| |||||||| ||||| ||||| || ||| || ||| | Sbjct 229176 GTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGTTTTAATGGGTTCAAAAAGTA 229235 Query 128820 AATCTAGCGACTGGGGAAGAAAAACAGTACAAGTTACAAT 128859 || ||| | ||||||||| |||| || |||| | ||| Sbjct 229236 AAGCTATGAATTGGGGAAGACAAACTGTTAAAGTGAAAAT 229275 >seq8 Length=318055 Score = 161 bits (178), Expect = 1e-34 Identities = 173/226 (77%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 128573 ACAGTTCTAGCTACAGCGTACACAGCAGACCC-AGCAGAGAATGGCGGTACATACGGTGG 128631 |||||| |||||||||| || ||||| |||| ||| || || || || ||||| || || Sbjct 28544 ACAGTTGTAGCTACAGCATATACAGCTCACCCGAGC-GAAAACGGTGGCACATATGGCGG 28486 Query 128632 AGTAGTTAAAACAGCAATGGGGCATAACTTATCTGCAAACCCTAGCATGAAAATGGTTGC 128691 || ||| |||||||| ||| | ||| |||| || || | ||||||||| | || Sbjct 28485 CCGTGTATTAACTGCAATGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGC 28426 Query 128692 AGTTGACCCTAGAGTAATTCCACTTGGTTCTCGTATATATGTAGAAGGATATGGGGAAGC 128751 |||||||| | |||||| ||| | || ||| ||| |||||||| || || ||||| Sbjct 28425 TGTTGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGC 28366 Query 128752 AATCGCGGGAGATACTGGTGGAGCAATCAAAGGTAACCGTATCGAT 128797 ||||| |||||||||||||| ||||| |||||||||||||| ||| Sbjct 28365 TATCGCTGGAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGAT 28320 >seq16 Length=199848 Score = 149 bits (164), Expect = 7e-31 Identities = 229/324 (71%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 128552 AAACCA---CAAGGT--AAAACAATTACA-GTTCTAGCTACAGCGTACACAGCAGACCCA 128605 |||||| |||||| |||| |||| | || ||| || || || ||||| |||||| Sbjct 160160 AAACCAACTCAAGGTGGAAAAGAATTTTACGTAACAGCAACCGCTTATACAGCTGACCCA 160219 Query 128606 GCAGAGAATGGCGGTACATACGGTGGAGTAGTTAAAACAGCAATGGGGCATAACTTATCT 128665 | || || ||| || | |||| | || ||| | | || ||||| ||| || Sbjct 160220 TCTGAAAACGGCTATAAACCGGGTGAAACTGTAAAATCTAAGTTAGGACATAATTTAACT 160279 Query 128666 GCAAACCCTAGCATGAAAATGGTTGCAGTTGACCCTAGAGTAATTCCACTTGGTTCTCGT 128725 ||||| || | ||||||| | |||| || || || || || ||| | |||||| | Sbjct 160280 GCAAATCCAAACATGAAATTAATTGCTGTAGATCCATCTGTTATCCCATTAGGTTCTACT 160339 Query 128726 ATATATGTAGAAGGATATGGGGAAGCAATCGCGGGAGATACTGGTGGAGCAATCAAAGGT 128785 ||||||||||||||||||| |||||| || |||||||||||| | ||||| ||||| Sbjct 160340 GTATATGTAGAAGGATATGGAACAGCAATTGCTGGAGATACTGGTAGTGCAATAAAAGGG 160399 Query 128786 AACCGTATCGATGTATTGATGCCATCTAAATCTCAATCTAGCGACTGGGGAAGAAAAACA 128845 | || ||| |||| |||||| | | ||||| ||| |||||||| |||| |||| Sbjct 160400 CATATCATTGATCTATTAATGCCAAATTCAGCTCAAGCTAATGACTGGGGTAGAAGAACA 160459 Query 128846 GTACAAGTTACAATCCTAAATTAA 128869 || |||||| ||| |||| ||| Sbjct 160460 GTTAAAGTTAAAATTTTAAACTAA 160483 >seq6 Length=382643 Score = 145 bits (160), Expect = 8e-30 Identities = 208/293 (71%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 128576 GTTCTAGCTACAGCGTACACAGCAGACCCAGCAGAGAATGGCGGTACATACGGTGGAGTA 128635 ||| |||| ||||| ||||||||||| ||| || ||||| || | || | | Sbjct 338947 GTTGTAGCAACAGCTTACACAGCAGATCCACTTGAAAATGGTTATAAAGCAGGCGACCAA 339006 Query 128636 GTTAAAACAGCAATGGGGCATAACTTATCTGCAAACCCTAGCATGAAAATGGTTGCAGTT 128695 || ||| |||| | || || |||||| | || || || | ||||||| | |||||||| Sbjct 339007 GTAAAATCAGCTTTAGGCCACAACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTT 339066 Query 128696 GACCCTAGAGTAATTCCACTTGGTTCTCGTATATATGTAGAAGGATATGGGGAAGCAATC 128755 || || || || |||||| | ||||| ||| || ||||| || || | ||||||| Sbjct 339067 GATCCAAGTGTCATTCCATTAGGTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATC 339126 Query 128756 GCGGGAGATACTGGTGGAGCAATCAAAGGTAACCGTATCGATGTATTGATGCCATCTAAA 128815 || || |||||||||||||| || |||||||| ||||| || || |||||| |||| Sbjct 339127 GCTGGTGATACTGGTGGAGCTATTAAAGGTAATAAAATCGACGTTTTAATGCCAGATAAA 339186 Query 128816 TCTCAATCTAGCGACTGGGGAAGAAAAACAGTACAAGTTACAATCCTAAATTA 128868 | ||| || ||||||| | |||||||| ||||| | | |||| || Sbjct 339187 GGTTCATCAAGTAGCTGGGGACGTAAAACAGTTACAGTTAAAGTATTAAACTA 339239 >seq361 Length=20807 Score = 141 bits (156), Expect = 1e-28 Identities = 172/234 (74%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 128569 AATTACAGTTCTAGCTACAGCGTACACAGCAGACCCAGCAGAGAATGGCGGTACATACGG 128628 ||||||||| ||| || || || |||||||| || |||||||| | | || || Sbjct 1057 AATTACAGTAGAAGCGACGGCATATACAGCAGATCCGAGTGAGAATGG---TTCGTATGG 1113 Query 128629 TGGAGTAGTTAAAACAGCAATGGGGCATAACTTATCTGCAAACCCTAGCATGAAAATGGT 128688 ||| || ||| |||||||||||| | ||| | ||||| || | |||||| | | Sbjct 1114 TGGTCGTGTATTAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAAT 1173 Query 128689 TGCAGTTGACCCTAGAGTAATTCCACTTGGTTCTCGTATATATGTAGAAGGATATGGGGA 128748 ||| ||||| || | ||||||||| ||||| || ||| |||||||||||||| || Sbjct 1174 TGCTGTTGATCCGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGA 1233 Query 128749 AGCAATCGCGGGAGATACTGGTGGAGCAATCAAAGGTAACCGTATCGATGTATT 128802 ||| || || ||||| || ||||| || || ||||| || ||||| |||||||| Sbjct 1234 AGCGATTGCTGGAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGTATT 1287 >seq9 Length=252781 Score = 125 bits (138), Expect = 8e-24 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 40302 GTTGGAAGATTAACAAAAGAGGTTGAATTACGTTATAC--CCAATCTGGACAAGCTGTAG 40359 ||||| | ||||| || || ||| |||||||| || ||||| | | || |||| Sbjct 22227 GTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTC--GCAGTAG 22284 Query 40360 CCACGTTTACATTAGCAGTAAACAGAACATTTACAAACCAGCAGGGAGAACGTGAAGCAG 40419 | || ||||| ||||| || || | ||||| | || ||||| || || |||||||| | Sbjct 22285 CTACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAGCAAGGTGAGCGTGAAGCTG 22344 Query 40420 ATTTCATAAATTGTGTGGTATGGAGAAAACAAGCCGAGAATGCAGCAAACTTTCTTAAAA 40479 | || || |||||||| ||||| | |||||||| || || | |||||| | | | |||| Sbjct 22345 ACTTTATTAATTGTGTAATATGGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAA 22404 Query 40480 AGGGCAGTTTAGCCGGTGTAGATGGACGACTT 40511 | || || ||||| || ||||||||||| ||| Sbjct 22405 AAGGTAGCTTAGCAGGCGTAGATGGACGTCTT 22436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 527935264960200