Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq64 363 1e-95 seq1 331 8e-86 seq2 179 3e-40 seq19 127 2e-24 >seq64 Length=95829 Score = 363 bits (402), Expect = 1e-95 Identities = 563/804 (70%), Gaps = 0/804 (0%) Strand=Plus/Plus Query 48681 TAAATCTTCAATATACTCTCCTTTTAATACTTGAATAGCCTCTTTGACTTCATTTGCATT 48740 ||||||||| | || |||||||| | ||| || ||||| ||||| ||||| Sbjct 88817 TAAATCTTCTGGACCTTCACCTTTTAACGTATCAATCGCTTCTTTCACTTCTAGAGCATT 88876 Query 48741 TCCCACTTCATATCCTAATGGCTGATTCATATCTGTAATGACTGCAATTGTTTTTCGATT 48800 || | || |||| | || || |||||||| ||| ||||| ||||||| || Sbjct 88877 ACCAATCGCAAATCCAAGAGGTTGTGACATATCTGAAATAACTGCCATTGTTTGACGTCC 88936 Query 48801 CAGATTTTTTCCAATATCAACCATTTCTTGTGCTAATGCTTTAGAGTCTTCTAATGTTTT 48860 | ||| ||||| ||| |||||| | ||||||||| |||| | |||||| |||||| Sbjct 88937 TACATTATTTCCGATACGTACCATTGCATGTGCTAATTCTTTTGCATCTTCTTCTGTTTT 88996 Query 48861 CATAAATGCTCCATTTCCTGTTTTAACATCTAATACAATTGCATCTGCTCCCATTGCGAt 48920 ||||||||| ||| |||||||| ||||| | ||| ||||| || || || ||| || Sbjct 88997 CATAAATGCACCAGCACCTGTTTTTACATCAAGTACGATTGCGTCAGCACCAGCTGCAAT 89056 Query 48921 ttttttACTCATAATGCTACTAGCAATTAATGGAATTGAATTAACTGTTCCAGTAACATC 48980 ||||||||||||||| ||| || ||||| |||||||| ||||| ||||| || || || Sbjct 89057 TTTTTTACTCATAATTGAACTTGCGATTAAAGGAATTGAGTTAACAGTTCCTGTTACGTC 89116 Query 48981 GCGTAATGCATATAATTTTTTGTCGGCAGGCACTAAAATTCCACTTTGTCCAACTAATGC 49040 |||||||||||| | ||||| || ||||| ||| |||| ||||||||| | || Sbjct 89117 GCGTAATGCATAAATCTTTTTATCTGCAGGTGTTAAGTTTCCTGTTTGTCCAATAACAGC 89176 Query 49041 GATTTTATGTGTATTAACTTGATTAATAAATTGTTCTCTTGTTAATTCTACGTTAAAGCC 49100 | ||| | || || || ||| || || ||| | || | ||| |||| || || Sbjct 89177 TACTTTGTCACGGTTTACAATATCAATGAACTGCTCTTTCGTAATTTCAACGTGGAATCC 89236 Query 49101 TTGTATAGATTCTAATTTGTCAATTGTTCCTCCTGTGTGCCCTAAACCTCTACCTGACAT 49160 || || | ||||||||| ||||||||||| || || || |||||||| | ||| ||||| Sbjct 89237 TTCTACCGCTTCTAATTTATCAATTGTTCCGCCCGTATGTCCTAAACCACGACCAGACAT 89296 Query 49161 TTTAGCAACAGGAATACCCAAAGAAGCAACCAATGGAGCAACGATTAAACTAATTTTATC 49220 ||| || || || | | | |||| |||||| ||||| | | | ||| | || |||| Sbjct 89297 TTTTGCTACTGGTACATCTAAAGCAGCAACTAATGGTCCTAATACTAATGTTGTTGTATC 89356 Query 49221 GCCGACTCCACCTGTGGAATGTTTATCTACTTTTACACCTTCGATTTTTGATAGGTCAAT 49280 || || || || || |||||||| |||||||| | ||||| ||| ||||| ||| || Sbjct 89357 ACCAACACCGCCAGTTGAATGTTTGTCTACTTTAATCCCTTCAATTGCTGATAAGTCGAT 89416 Query 49281 TGTTTCACCAGAATTAATCATGGCATTAGTTAAGGCAGAGATTTCTTCTTTAGACATGCC 49340 ||||| ||||| | || ||| || | ||||| | | ||| | | ||| | Sbjct 89417 CGTTTCTCCAGACTCAACCATCGCCATCGTTAAATCTGCACGTTCGCGATCTGTCATATC 89476 Query 49341 ATTGAAATAAATTGCCATTAACATAGAAGCCATTTGATAATCAGGAATGTCGCCGTTCGT 49400 || || | ||||||||| | | | || ||||||||||||||| |||| || Sbjct 89477 TTTAAAGAAGATTGCCATTGCAAGCGCACTCACTTGATAATCAGGAATACTTCCGTCTGT 89536 Query 49401 GTAACCGCGGATGATAAAATCAATTTCTTCTTTTGAAAGCTCATAACCATCCCGTTTTTT 49460 || || || | || | |||||||| | | | || | || || |||||||| Sbjct 89537 ATATCCATTAATAAAGAATTTGATTTCTTCAGTCGTTAATTCTTTGCCGTCACGTTTTTT 89596 Query 49461 CGCAATTAAATCGACCATTCTCAT 49484 ||||| | ||| ||||||||||| Sbjct 89597 TGCAATAATATCTACCATTCTCAT 89620 >seq1 Length=1156483 Score = 331 bits (366), Expect = 8e-86 Identities = 547/788 (69%), Gaps = 6/788 (1%) Strand=Plus/Plus Query 48700 CCTTTTAATACTTGAATAGCCTCTTTGACTTCATTTGCATTTCCCA---CTTCATATCCT 48756 |||| |||| | ||| || |||| ||||| ||| || || | ||||| || Sbjct 381471 CCTTGTAATGTATCAATTGCTTCTTGAACTTCTAATGCGTTACCGATAGCTTCA---CCG 381527 Query 48757 AATGGCTGATTCATATCTGTAATGACTGCAATTGTTTTTCGATTCAGATTTTTTCCAATA 48816 | ||| ||| ||||||| | ||| ||||| || || || ||| | || || || ||| Sbjct 381528 AGTGGTTGACTCATATCAGAAATAACTGCCATCGTATTACGACCAACGTTATTACCGATA 381587 Query 48817 TCAACCATTTCTTGTGCTAATGCTTTAGAGTCTTCTAATGTTTTCATAAATGCTCCATTT 48876 |||||| ||| |||||| ||| | ||||| |||||||||||||| || | Sbjct 381588 CGTACCATTGCTTCTGCTAAACGTTTTGCATCTTCATCCGTTTTCATAAATGCACCTGCT 381647 Query 48877 CCTGTTTTAACATCTAATACAATTGCATCTGCTCCCATTGCGAtttttttACTCATAATG 48936 || ||||| ||||| | |||||||||||||| || || ||||||||||||||||| Sbjct 381648 CCAGTTTTTACATCAAGAACAATTGCATCTGCACCAGCAGCAATTTTTTTACTCATAATC 381707 Query 48937 CTACTAGCAATTAATGGAATTGAATTAACTGTTCCAGTAACATCGCGTAATGCATATAAT 48996 ||| ||||| | |||||||| || |||||| | || ||||| || | |||||||| Sbjct 381708 GAACTTGCAATAAGCGGAATTGAGTTTACTGTTGCTGTTACATCACGAAGTGCATATAGC 381767 Query 48997 TTTTTGTCGGCAGGCACTAAAATTCCACTTTGTCCAACTAATGCGATTTTATGTGTATTA 49056 ||||| || ||||| ||| | |||||||| || | | |||||||| | | ||| Sbjct 381768 TTTTTATCAGCAGGTGTTAAGTTACCACTTTGGCCGATAACAGCGATTTTGTTTTCATTT 381827 Query 49057 ACTTGATTAATAAATTGTTCTCTTGTTAATTCTACGTTAAAGCCTTGTATAGATTCTAAT 49116 || || || |||| || || | ||| || | || ||| | | | ||||||| Sbjct 381828 ACAAGACGCATGAATTCATCGTTTTCAATTTCCACATGGAATCCTGGGACTGCTTCTAAT 381887 Query 49117 TTGTCAATTGTTCCTCCTGTGTGCCCTAAACCTCTACCTGACATTTTAGCAACAGGAATA 49176 || || ||||| || || || || |||||||| | || |||||||| || || || | | Sbjct 381888 TTATCTATTGTACCACCAGTATGTCCTAAACCGCGTCCAGACATTTTCGCTACTGGTACA 381947 Query 49177 CCCAAAGAAGCAACCAATGGAGCAACGATTAAACTAATTTTATCGCCGACTCCACCTGTG 49236 | |||| ||| || |||||| | | | | | || |||| || || |||||||| Sbjct 381948 TCTAAAGCAGCTACTAATGGACCTAATACAAGTGTCGTTGTATCACCAACACCACCTGTT 382007 Query 49237 GAATGTTTATCTACTTTTACACCTTCGATTTTTGATAGGTCAATTGTTTCACCAGAATTA 49296 ||||| |||||||||||||||||||| || |||| ||| ||||| ||||| ||| Sbjct 382008 GAATGCTTATCTACTTTTACACCTTCAATAGCCGATAAGTCGATTGTATCACCGCTATTT 382067 Query 49297 ATCATGGCATTAGTTAAGGCAGAGATTTCTTCTTTAGACATGCCATTGAAATAAATTGCC 49356 | ||| || | ||||| ||| |||| | ||| | | ||| |||||||| Sbjct 382068 ACCATTGCCATCGTTAAATCAGCACGCTCTTGATCGTTCATATCTTGGAAGAAAATTGCC 382127 Query 49357 ATTAACATAGAAGCCATTTGATAATCAGGAATGTCGCCGTTCGTGTAACCGCGGATGATA 49416 ||| | ||| | ||||||||||||||| || || ||||| || || | ||| Sbjct 382128 ATTGCAAGTGAACTTACTTGATAATCAGGAATATCACCATTCGTATATCCTTCAACAATA 382187 Query 49417 AAATCAATTTCTTCTTTTGAAAGCTCATAACCATCCCGTTTTTTCGCAATTAAATCGACC 49476 || | |||||||||| | | | ||| || || |||||||| ||||||| || ||| Sbjct 382188 AAGTTAATTTCTTCTGTCGTTAATGCATGTCCGTCACGTTTTTTTGCAATTAGGTCCACC 382247 Query 49477 ATTCTCAT 49484 |||||||| Sbjct 382248 ATTCTCAT 382255 Score = 118 bits (130), Expect = 1e-21 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 5934 TGGTGATAAAGTTAAATTGTTCGGATTCGGTAATTTTGAAGTTCGTGAGCGTGCAGCTCG 5993 |||||| ||||| || | |||||||||||| || |||||||| || | || ||||| Sbjct 11507 TGGTGAAAAAGTACAACTTATCGGATTCGGTACATTCGAAGTTCGCGAAAGAGCTGCTCG 11566 Query 5994 TAAAGGTCGGAATCCTCAAACTGGAGAAGAAATTGAAATTCCAGCAACTAAATCCCCTGC 6053 || ||| || || || |||||||| |||||||| |||| |||| ||||| ||||| Sbjct 11567 TACAGGCCGTAACCCACAAACTGGTGAAGAAATGCAAATCGCAGCTTCTAAAGTACCTGC 11626 Query 6054 TTTCAAACCTGCAAAAGCGTTAAAAGATGCGGTTAAATAA 6093 ||||||| ||| |||| ||||||| || || |||||| Sbjct 11627 TTTCAAAGCTGGTAAAGAACTAAAAGAAGCTGTAAAATAA 11666 Score = 82.4 bits (90), Expect = 7e-11 Identities = 100/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 66982 TGACGCTCAATTTCAGCTTTTAATTTTGGCTCAGGTGGCTGCCAACCTTCAGGTTTAATA 67041 ||||| ||||||||||| | || ||| || |||| ||||| ||||| || || | | Sbjct 1024074 TGACGTTCAATTTCAGCACGAAGTTGTGGTTCCGGTGCTTGCCAGCCTTCTGGCTTTAGA 1024015 Query 67042 ATTTTACCAT---CTTCACGATATCTCGGTTTACCATCTGGGAATAATTTTGACATATTA 67098 || ||||| | ||||||| ||| || || ||||| ||||||| ||||| ||| || Sbjct 1024014 ATCTTACCGTCGCCTTCACGGAATCGAGGCTTCCCATCAGGGAATAGTTTTGCCATGTTG 1023955 Query 67099 GCTTCTTGTACAATTT 67114 || | | |||||||| Sbjct 1023954 GCGTTGTTTACAATTT 1023939 >seq2 Length=633208 Score = 179 bits (198), Expect = 3e-40 Identities = 144/174 (83%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 5920 GAAACTCTTAAAAATGGTGATAAAGTTAAATTGTTCGGATTCGGTAATTTTGAAGTTCGT 5979 ||| || | ||| | ||||||||||| || | ||||||||||||| || ||||||||| Sbjct 322666 GAAGCTTTAAAACAAGGTGATAAAGTACAACTAATCGGATTCGGTAACTTCGAAGTTCGT 322725 Query 5980 GAGCGTGCAGCTCGTAAAGGTCGGAATCCTCAAACTGGAGAAGAAATTGAAATTCCAGCA 6039 |||||||| |||||||||||||| || || ||||| || || || |||||||| | ||| Sbjct 322726 GAGCGTGCGGCTCGTAAAGGTCGTAACCCACAAACAGGTGAGGAGATTGAAATCGCTGCA 322785 Query 6040 ACTAAATCCCCTGCTTTCAAACCTGCAAAAGCGTTAAAAGATGCGGTTAAATAA 6093 | |||| ||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 322786 AGTAAAGTACCTGCATTCAAACCTGGTAAAGCGTTAAAAGATGCGGTTAAATAA 322839 >seq19 Length=184000 Score = 127 bits (140), Expect = 2e-24 Identities = 260/383 (68%), Gaps = 10/383 (3%) Strand=Plus/Minus Query 104376 TGCATTTACATCTCGGTCATGATATGTTTTGCAATCTGGACATATCCATTCACGTAGATT 104435 ||| || | ||| | ||||| | ||| |||| ||||| ||||| |||||| || Sbjct 176967 TGCGTTAATATCCCTATCATGGTGTGTACGGCAAGAAGGACAATCCCATTTACGTAGGTT 176908 Query 104436 TAAtttttttACTTCTTTATTCCGGTATCCACATTCAGAACAAAGTTGAGAAGAAGGAAA 104495 | ||||| || |||||||| | |||||||| |||||| | ||| |||||||| Sbjct 176907 CAGATTTTTAACGTCTTTATTTTGATATCCACAACAAGAACATAATTGGCTGGAAGGAAA 176848 Query 104496 TGTTTTACCTATTTTTACAACAGTTCTACCATACCAATTAGCTTTGTACTCTAACATAGA 104555 |||||| || | || | | |||||||| || ||||| || || ||||| | Sbjct 176847 TGTTTTCGATACGACAATGACTTGTTTGCCATACCATTTTGCTTTATATTCCAACATGGT 176788 Query 104556 AACAAATTCAGACCAAGACGCATCTGTGATAGATTTTGATAAATGATGATTTTTCATCAT 104615 ||||| ||||| || | || | || | ||||| ||| | |||||| || | ||| Sbjct 176787 TCGAAATTGTGACCATGATACCTCACTAATTGCTTTTGCTAACTTATGATTCTTTAACAT 176728 Query 104616 ATTTTCTACCTGCAAGTCCTCCAAACAGATCA---CTTGGTTTTCG-TGA-ATCAGTTTG 104670 ||| ||| ||||| ||||| | || ||||| | ||||||| | ||| |||||| Sbjct 176727 ATTCAATACTTGCAAATCCTCTATACCGATCACATCGTGGTTTTTGATGATGTCAGTT-- 176670 Query 104671 GTGGACAGTTTATGTAGAAAATCACGTCTTGCATTTACAATCTTTTCATGGATTTTTGCA 104730 || | ||| | | |||| ||| |||||| || | |||||||||| | || Sbjct 176669 ---GAGATTTTGTCCAAGTAATCTTTTCTAGCATTTGTCATGTATTCATGGATTCTAGCT 176613 Query 104731 ACTTTTAAGCGTGCTTTATTCCA 104753 ||||||| ||| ||||||||| Sbjct 176612 ACTTTTACTCGTTGTTTATTCCA 176590 Score = 114 bits (126), Expect = 1e-20 Identities = 257/383 (67%), Gaps = 10/383 (3%) Strand=Plus/Minus Query 104376 TGCATTTACATCTCGGTCATGATATGTTTTGCAATCTGGACATATCCATTCACGTAGATT 104435 ||| || | ||| | ||||| | ||| |||| ||||| ||||| |||||| || Sbjct 135881 TGCGTTAATATCCCTATCATGGTGTGTACGGCAAGAAGGACAATCCCATTTACGTAGGTT 135822 Query 104436 TAAtttttttACTTCTTTATTCCGGTATCCACATTCAGAACAAAGTTGAGAAGAAGGAAA 104495 | ||||| || |||||||| | |||||||| |||||| | ||| |||||||| Sbjct 135821 CAGATTTTTAACGTCTTTATTTTGATATCCACAACAAGAACATAATTGGCTGGAAGGAAA 135762 Query 104496 TGTTTTACCTATTTTTACAACAGTTCTACCATACCAATTAGCTTTGTACTCTAACATAGA 104555 |||||| || | || | | |||||||| || ||||| || || ||||| | Sbjct 135761 TGTTTTCGATACGACAATGACTTGTTTGCCATACCATTTTGCTTTATATTCCAACATGGT 135702 Query 104556 AACAAATTCAGACCAAGACGCATCTGTGATAGATTTTGATAAATGATGATTTTTCATCAT 104615 ||||| ||||| || | || | || | ||||| ||| | |||||| || | ||| Sbjct 135701 TCGAAATTGTGACCATGATACCTCACTAATTGCTTTTGCTAACTTATGATTCTTTAACAT 135642 Query 104616 ATTTTCTACCTGCAAGTCCTCCAAACAGATCA---CTTGGTTTTCG-TGA-ATCAGTTTG 104670 ||| ||| ||||| ||||| | || ||||| | ||||||| | ||| ||||| Sbjct 135641 ATTCAATACTTGCAAATCCTCTATACCGATCACATCGTGGTTTTTGATGATGCCAGTT-- 135584 Query 104671 GTGGACAGTTTATGTAGAAAATCACGTCTTGCATTTACAATCTTTTCATGGATTTTTGCA 104730 || | ||||| | |||| ||| |||||| || | |||||| ||| | || Sbjct 135583 ---GAGATTTTATCCAAGTAATCTTTTCTAGCATTTGATATGTATTCATGAATTCTAGCT 135527 Query 104731 ACTTTTAAGCGTGCTTTATTCCA 104753 || || | ||| ||||||||| Sbjct 135526 ACCTTGACTCGTTGTTTATTCCA 135504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451994834007600