Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq4 343 1e-89 >seq4 Length=425142 Score = 343 bits (380), Expect = 1e-89 Identities = 601/865 (69%), Gaps = 15/865 (2%) Strand=Plus/Minus Query 125924 TTATACCGCAATAGGTGCTTTAATAGCAGGGTGTGATTCATAATTTATCAATTCT-AAAT 125982 |||||| |||| ||||||||||| || || || | || || | ||||| | |||| Sbjct 260190 TTATACTGCAACCGGTGCTTTAATTGCTGGATGCGGATCGTATCCT-TCAATCGTTAAAT 260132 Query 125983 CTTCATAATTAATATCAAAAATTGATTT---ATCTGTATTAATTTTTAATTGAGGTGGTA 126039 |||| | || ||| |||| ||||| ||||| ||| | | | | || || | Sbjct 260131 CTTCCATTTCAAAATCGAAAACAGATTTCACATCTGGATTTAATGTAAGTTTCGGGAATG 260072 Query 126040 GATAACTATCTCTTGATAATTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTG 126099 || || | || ||||| | | || | || | |||||| | |||||| |||| Sbjct 260071 GACGTGGTTCACGTGCCAATTGCTTTTCTACTTGTTCAAAATGATTTGTATAAATGTGTG 260012 Query 126100 CATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAGAT 126159 |||| |||| |||||||| ||||| ||||| |||||||| ||||| | ||||| | || Sbjct 260011 CATCACCAATTGTATGAACAAATTCTCCCACTTCAAGTCCGCATTCATGTGCAATTAAAT 259952 Query 126160 GTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACCTAAAAATATATCAGCACTTC 126219 |||| |||| | ||||||||||| || || |||| || | ||||| ||| |||||| Sbjct 259951 GTGTTAGTAGTGAGTAACTTGCAATGTTAAATGGAATTCCAAGGAATATGTCACCACTTC 259892 Query 126220 TTTGATATAATTGACAATTTAATTTACCCTCTTGTACGTAAAATTGAAACATTGTGTGGC 126279 |||||||||| |||||| | || || ||| ||| ||||| || || | || || | Sbjct 259891 TTTGATATAACTGACAAGAAAGCTTTCCATCTGCTACATAAAACTGGAATAGCGTATGAC 259832 Query 126280 AAGGTGGTAATGCCATTGAATCGATT--TCAGTAGGATTCCATGCTGAAACAATGTGACG 126337 |||| ||||| ||||| | | | | || |||||||| || ||||| || ||| Sbjct 259831 AAGGCGGTAAGGCCAT--ACTTGGTACATCTTCTGGATTCCAAGCAGAAACGATTAAACG 259774 Query 126338 TCGAGAGTTTGGATTGGTTTTAATTTGTTGTATAACTGATTTTAATTGATCGTAATGATT 126397 || |||| ||| | ||||||| || || || |||||||||||| | || | Sbjct 259773 ACGTGAGTCTGGTGTTTTTTTAATCATTTCAATTACATCTTTTAATTGATCA-AGTGTCT 259715 Query 126398 T-CCATTTTTATCTTCCCAATCTCTCCATTGTTTACCATAAACATTCCCTAAGTTGCCAT 126456 ||| | | || |||| | | ||| |||||||| ||||| | ||||| | |||| Sbjct 259714 CACCAGCTGTCGTTTTCCAAGCACGCCACTGTTTACCGTAAACGTCTCCTAAATAACCAT 259655 Query 126457 ATTTTTTAGCAAATGCATCATCGTTTAGAATACGTTCTTT--AAATTTTTTCATTTCTTC 126514 |||| || | || ||||||| | || || |||||||| ||| || ||||| || Sbjct 259654 ATTTATTTGAGAACTCATCATCTTCTAAAA--CGTTCTTTTTAAACAATTCCATTTGCTC 259597 Query 126515 TTTATACTGCTCGTTAAATTCAGGGTCTTGCTGGGAACGATGTCCAAAATCTGTCATGTC 126574 | ||||| | |||||||| ||||| || || ||| | |||||||| |||||||| Sbjct 259596 GTCGTACTGTACTTTAAATTCTTCATCTTGTTGTGAGCGAAGACCAAAATCAGTCATGTC 259537 Query 126575 TGGTCCATGATAATCATCAGACTGAACATAATTTTCAAATGCCCATTCATTCCATATATT 126634 || ||| ||| |||||| | || | | | ||| |||||||||||||| || || Sbjct 259536 AGGACCAGTATACTCATCACTTTCTACCCAGCTCTTAAAAGCCCATTCATTCCAAATGTT 259477 Query 126635 GTTATTATATTTAAGTAGGTATTGAATGTTTGTATCTCCTTTAATAAACCATAATAATTC 126694 ||||||| | | || || |||| |||||||| ||||| |||||||| | | ||| Sbjct 259476 ATTATTATGCTGCAATAAATAGCGAATATTTGTATCACCTTTCATAAACCAAAGCAGTTC 259417 Query 126695 AGTTGCTACTAATTTAAAAGAAACCTTTTTGGTTGTAAGTAAAGGAAACCCTTTGGTTAA 126754 | ||||||| | ||| | || | || ||||| | ||||||||| ||||| ||| Sbjct 259416 ACTTGCTACAAGGCGAAACGGTACTCTCTTTGTTGTTAATAAAGGAAAACCTTTACTTAG 259357 Query 126755 ATCGAAACGCAATTGATGCCCAAAT 126779 ||| ||||||| ||||| |||||| Sbjct 259356 ATCAAAACGCATTTGATATCCAAAT 259332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408571285027115