Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_029121.1 Length=151417 Score E Sequences producing significant alignments: (Bits) Value seq361 100 3e-16 seq2 100 3e-16 seq8 86.0 6e-12 >seq361 Length=20807 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 92112 TCAATGCGGTTTCCTTTAATTGCTCCGCCTGTGTCTGCTGCAATGGCTTGTCCATACCCT 92171 ||||| || ||||||||||| || || || |||||| | ||||| |||| |||||| ||| Sbjct 1281 TCAATACGATTTCCTTTAATCGCACCACCGGTGTCTCCAGCAATCGCTTCTCCATATCCT 1222 Query 92172 TCAACGTACACTGTAGAGCCAAGTGGAATTACATTAGGGTCTACGGCAATAACTTTTTGA 92231 || || | ||| | || ||||| |||||||| || || || || ||||| ||||| | Sbjct 1221 TCTACCCATACTTTTGATCCAAGCGGAATTACTTTCGGATCAACAGCAATTACTTTCATA 1162 Query 92232 TTAGGGTTAGATCGTAAATC 92251 || || || | | |||||| Sbjct 1161 TTTGGATTTGCTGTTAAATC 1142 >seq2 Length=633208 Score = 100 bits (110), Expect = 3e-16 Identities = 393/610 (64%), Gaps = 16/610 (3%) Strand=Plus/Minus Query 49072 CTCATCCGCAGAAATCTTCTTCGTATCAAGGAAGTCATTGATGTCAGGGTGGAATACGTT 49131 |||||| ||| || || || ||||||||||| ||| | || || ||||| | ||| Sbjct 184332 CTCATCGGCATTTATTTTTTTTGTATCAAGGAATTCAATAATATCCCAATGGAAAATGTT 184273 Query 49132 TAGATACACACTCCCTGATCCTTGTCTTTGTCCCATCTGATCTGCGTAGCGGAATGCATT 49191 || ||| || || | |||| || ||| || | ||||| || || || | || Sbjct 184272 TAAATATACTGCACCGGCACCTTTTCGTTGGCCAAGCTGATTCGCATATGAAAACGAATC 184213 Query 49192 ATCAAGAAGTTTCATAACCCCTACGACGCCTTTAGTAGCGTTCTCTACGCCTTTGATGTC 49251 ||||| | ||||||||| ||| ||||| | | |||||| || | ||||| || | Sbjct 184212 TTCAAGCAATTTCATAACAGGTACTACGCCACTTGCAGCGTTGTCGATACCTTTAATTTG 184153 Query 49252 TTCCCCTTTAGCTCGAAGCTTAG-TCAGGTTAAGACTCACTCCTCCGCCTAGTTTTGATA 49310 || || || || ||||||| | || |||| || ||||| ||||| | ||| |||| Sbjct 184152 CTCACCGCGTGCGCGTAGCTTAGATAAGTTTAAAGCT-ACTCCCCCGCCGATTTTCGATA 184094 Query 49311 GCTGCATGG------ACATGTCAACAGCCTTAGAAATATCGTTCAGGGAGTCGTTTACTT 49364 ||||| | |||| || |||| ||| || || | |||| | | Sbjct 184093 ATTGCATCGCAGTATTAATGTTAA-AGCCGATCGAAT----TTAAGCTA-TCGTCCATCT 184040 Query 49365 CCATCAAGAAGCAGCTTACAAGCTCTCCACGGCGTTTTCTACCAGCATTTAGGAATGTCG 49424 | | |||||| || || | ||||| | | |||| || ||||||| || || | Sbjct 184039 CTAACAAGAAACAAGACACCATTTCTCCTCTTCTGCTTCTTCCCGCATTTAAAAAGGTTG 183980 Query 49425 GAGTACTCGGTTGGTATTCTTGGTTAAGCAGCA-GCTCGACAAACTGCTTGGCTTTTTTA 49483 | || |||||||| | ||| || | | || ||| | | || || | || || | Sbjct 183979 GTGTCGCTGGTTGGTAGTTTTGTTTTACAATCATGCTTG-CGAATTGTCTTGCCTTCGAA 183921 Query 49484 ACATCCCCATCAGAGAAGAACAAAGACACGATAGCGATACGATCTTCGTAACGCTCTAAA 49543 ||||| || ||| | || || || || || | ||||||||| || | ||||| Sbjct 183920 ACATCACCGCGTCCTAAGTATAATGAAACAATTGCTACACGATCTTCATAGCTTTCTAAG 183861 Query 49544 ATTCGTTGCTTATCATTAGTTTTGAGTGCATAATCGTTGTAGAACTTAAACGCACTCATG 49603 | ||| | |||||| ||||| | |||||||| |||||||||||| | || ||| Sbjct 183860 TATTGTTTTTGATCATTCGTTTTTAACGCATAATCTTTGTAGAACTTAGATGCTGCCATA 183801 Query 49604 AAAGAAGGGAAACGAAACTTCTTGCTATATGCGAGTTTAAACACATCTTTAATTTCTTTG 49663 |||| |||| || || | | ||| |||| ||| | || || | | ||| | Sbjct 183800 TAAGATTGGAACTCGAAGTTTTCACCATAAGCGATGTTATATACTTCCTCTACTTCCTCC 183741 Query 49664 AAACTATACT 49673 || ||||||| Sbjct 183740 AAGCTATACT 183731 Score = 86.0 bits (94), Expect = 6e-12 Identities = 115/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 46845 ATTTCTTGAGCTAGCATACCGATGTATGCTCCGTGAATTGCTTCGTCTCGGATGATCAAG 46904 |||| ||| |||| ||||||| | || | |||||||||| || || || || |||||| Sbjct 186335 ATTTGTTGTGCTAAAATACCGACGAATACGCCGTGAATTGACTCATCACGAATTATCAAG 186276 Query 46905 TTGATGATTTCTCCGGAGTT--CATCAGTTTACCTTGTCCATAAAAGTATAAGGGGTAGT 46962 ||||| || || || | || | ||||| ||||| ||| ||||| | || ||| Sbjct 186275 TTGATAATCTCACC--ACTTGCTGTTAGTTTTCCTTGACCAGCTAAGTAAAGTGGATAGA 186218 Query 46963 AGAAACCACTATAGAACAAGAAGCTCTCTAGGAAAACA 47000 |||| || |||||||| ||| | || |||| ||| ||| Sbjct 186217 AGAATCCGCTATAGAATAAGTAACTTTCTAAGAACACA 186180 >seq8 Length=318055 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 92106 AAGATGTCAATGCGGTTTCCTTTAATTGCTCCGCCTGTGTCTGCTGCAATGGCTTGTCCA 92165 ||||| ||||| ||||| ||||||||||| || || || ||| | || || |||| ||| Sbjct 28315 AAGATATCAATACGGTTACCTTTAATTGCACCACCAGTATCTCCAGCGATAGCTTCTCCG 28374 Query 92166 TACCCTTCAACGTACACTGTAGAGCCAAGTGGAATTACATTAGGGTCTACGGCAATAACT 92225 || ||||| || | ||| |||| || | ||| ||||| || ||||| || || || | | Sbjct 28375 TAACCTTCTACCCATACTTTAGATCCTAATGGGATTACTTTCGGGTCAACAGCGATCATT 28434 Query 92226 TT 92227 || Sbjct 28435 TT 28436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 484373430089400