Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_030903.1 Length=152069 Score E Sequences producing significant alignments: (Bits) Value seq19 897 0.0 seq6 93.3 4e-14 seq8 86.0 6e-12 >seq19 Length=184000 Score = 897 bits (994), Expect = 0.0 Identities = 940/1227 (77%), Gaps = 20/1227 (2%) Strand=Plus/Plus Query 113764 GGAGGTGAAAGTCATGTTGGTCAATAAAGCATATAAATTTCGTATCTATCCAAGCAAAGA 113823 || ||||||| ||| || |||||| |||||||||||||||||||||||||| ||| Sbjct 175896 GGGGGTGAAACGAATGATGATCAATACAGCATATAAATTTCGTATCTATCCAAATCAAGC 175955 Query 113824 ACAAGAAATACTGATTGCTAAAACAATCGGTTGTTCTCGTTTTGTATTCAATCATTTCCT 113883 ||||| | || ||| |||||| || || ||||||||||||||||||||||||||||| Sbjct 175956 ACAAGCGACCCTAATTAATAAAACGATTGGCTGTTCTCGTTTTGTATTCAATCATTTCCT 176015 Query 113884 CGCAAAATGGAACGATACTTATAAGGCAACAGGAAAAGGTTTGACTTACAATTCGTGTTC 113943 | |||| | || | || || | |||||||||||||||||| || | | || || Sbjct 176016 ATCTCTATGGGATAATGCATACAAAGAAACAGGAAAAGGTTTGACATATGGTACATGCTC 176075 Query 113944 TTCTCAATTAAC--CCAATTAAAGAAAGAATTAGTTTGGTTAAAAGAGGTGGACAGCATT 114001 | | || | | ||| | |||||||| || |||||| ||||||| ||||| || ||| Sbjct 176076 TGCCAAACTTCCTGCCA--TGAAGAAAGAGTTTGTTTGGCTAAAAGAAGTGGATAGTATT 176133 Query 114002 GCGATTCAATCTTCACTCAAAAACCTTGCTGATGCTTATTCTCGCTTCTTTAAGAAGCAA 114061 |||||||| || || | |||||||| ||||| ||| | || || || || || ||| Sbjct 176134 GCGATTCAGTCGTCTGTTCGCAACCTTGCGGATGCATATACACGATTTTTCAAAAAACAA 176193 Query 114062 AACGATGCACCTCGCTTCAAGTCCAAAAAGAATAAGGTTCAATCTTATACAACAAAACAC 114121 || ||| || || ||||| |||||||||||||| || ||||||||||| |||||||| Sbjct 176194 AATAGTGCCCCGCGTTTCAAATCCAAAAAGAATAACGTACAATCTTATACCACAAAACAA 176253 Query 114122 ACGAATGGAAACATTGCCATTGTAGGCAACAAAATTAAATTGCCGAAACTTGGTCTTGTT 114181 || |||| ||| |||||| ||| ||| |||||||| || ||||| ||||| || |||||| Sbjct 176254 ACAAATGAAAATATTGCCGTTGAAGGGAACAAAATAAAGTTGCCCAAACTAGGCCTTGTT 176313 Query 114182 CGCTTTGCAAAAAGTCGTGAAGTACATGGTCGTATTCTTAACGCTACTGTTAGACGTAAT 114241 || ||||| ||||||||||||||||| || |||||| | || || ||||||||||| || Sbjct 176314 CGATTTGCCAAAAGTCGTGAAGTACAAGGACGTATTGTAAATGCGACTGTTAGACGGAAC 176373 Query 114242 CCGAGTGGTAAATATTTTGTTTCCATTCTT-GTAGAAACAGAGGTGCAACCATTAGAAAA 114300 || ||| | ||| ||||| | |||| || || |||||||| |||||| | | || Sbjct 176374 CCTTCTGGCAGATACTTTGTGT-CATTGTTAGTTGAAACAGAAGTGCAAGAACTTCCGAA 176432 Query 114301 AACAGGTTCTTCTATTGGTATAGATGTTGGATTAAAAACATTCGCAACTCTTTCAGATGG 114360 |||| ||||| ||||| || ||||| ||| ||||| ||||| | | |||||||| Sbjct 176433 AACACATTCTTACATTGGAATGGATGTGGGACTAAAAGATTTCGCCATATTATCAGATGG 176492 Query 114361 AACACCATACGAAAATCCAAAGTGGTTTCGTAAACTTGAAGAAAAATTAGCAAACGCACA 114420 |||| | || ||||||| |||| ||||| | | |||||||| || ||||| ||||| Sbjct 176493 AACAACCTATAAAAATCCGAAGTTTTTTCGATCATTAGAAGAAAAGTTGGCAAAAGCACA 176552 Query 114421 ACGTATCCTTTCCAGACGCACAAAAGGCGGTTCTAATTGGAATAAGCAACGAATTAAAGT 114480 ||| | ||||| ||| | | ||||| |||| |||||||| |||||| | ||||| Sbjct 176553 GCGTGTTCTTTCTAGAAGAATGAAAGGATCTTCTCGCTGGAATAAACAACGAGTAAAAGT 176612 Query 114481 TGCACGTATTCACGAAAAAATCACCAATGCAAGAACAGATTACTTGCAAAAAATCTCTAC 114540 || | || || ||| | || || ||||| |||| |||||||||| | |||||||| || Sbjct 176613 AGCTAGAATCCATGAATACATGACAAATGCTAGAAAAGATTACTTGGACAAAATCTCAAC 176672 Query 114541 CGAAATCATCAAAAACCACGATGTAATCGGTATTGAAGATTTGCAAGTAAGTAATATGCT 114600 || |||||||||||||||||||| |||||||| || |||||||||||| |||||| | Sbjct 176673 TGACATCATCAAAAACCACGATGTGATCGGTATAGAGGATTTGCAAGTATTGAATATGTT 176732 Query 114601 AAAGAATCATAAGTTAGCCAAATCTATTAGTGAAGTATCTTGGTATCAATTCAGAACGAT 114660 |||||||||||||||||| ||| | |||||||| ||||| |||| ||||| |||| || Sbjct 176733 AAAGAATCATAAGTTAGCAAAAGCAATTAGTGAGGTATCATGGTCACAATTTCGAACCAT 176792 Query 114661 GCTTGAATACAAAGCGAAATGGTACGGCAAACAAGTTGTTGCGGTATCTAAAACGTTTGC 114720 | | ||||| ||||| |||||||| ||||||||||| ||| ||||| ||||| ||| | Sbjct 176793 GTTGGAATATAAAGCAAAATGGTATGGCAAACAAGTCATTGTCGTATCGAAAACATTTCC 176852 Query 114721 AAGTTC---TCAATTGTGTTCGTGTTGCGGATACAAAAACAAAGACGTTAAGAATCTAAA 114777 ||| ||||| ||||| ||||| ||||| |||| ||||||||||| ||||| || Sbjct 176853 ---TTCCAGCCAATTATGTTCTTGTTGTGGATATCAAAATAAAGACGTTAAAAATCTGAA 176909 Query 114778 TCTTCGTGAATGGGATTGCCCATCTTGCGGAACACATCACGATAGAGACATTAACGCAGG 114837 || ||| |||||||||| || |||||| | ||||| || ||||| || ||||||||| | Sbjct 176910 CCTACGTAAATGGGATTGTCCTTCTTGCCGTACACACCATGATAGGGATATTAACGCAAG 176969 Query 114838 ACAAAATATTAAAAATGAAGCGATAAGACTTCTAACCGTAGGGGCTACGGGGTTAGCCTA 114897 ||| | || |||||||||||||| |||||||||| | || || ||||||||||||| Sbjct 176970 TATCAATCTAAAGAATGAAGCGATAAGGCTTCTAACCGCAAGGACTGCGGGGTTAGCCTA 177029 Query 114898 CTAAATATCTGTTCGATAGAACGGAGTTCGTAGGAATCCCTCACTTCAAACAACCCGTAA 114957 | ||| |||||||||||| | | |||||||||| | |||| | ||| || Sbjct 177030 ATCAATTAGAGTTCGATAGAACTCTTTACTTAGGAATCCCCCTCTTCTA--AAC---GAA 177084 Query 114958 GGGTGTTAAGTGGGGGTAGTTCAAGAA 114984 | | |||||||| |||||||| || Sbjct 177085 GTG---AAAGTGGGGATAGTTCAATAA 177108 Score = 843 bits (934), Expect = 0.0 Identities = 924/1223 (76%), Gaps = 18/1223 (1%) Strand=Plus/Plus Query 113764 GGAGGTGAAAGTCATGTTGGTCAATAAAGCATATAAATTTCGTATCTATCCAAGCAAAGA 113823 ||||||||| ||| | | |||||||| |||||||||||||||||||||| ||| Sbjct 134810 GGAGGTGAATCAAATGATAATTAATAAAGCCTATAAATTTCGTATCTATCCAAATCAAGC 134869 Query 113824 ACAAGAAATACTGATTGCTAAAACAATCGGTTGTTCTCGTTTTGTATTCAATCATTTCCT 113883 ||||| ||| || ||| ||||| || ||||||||||| |||||||||||||||||||| Sbjct 134870 ACAAGCAATTCTAATTAACAAAACGATAGGTTGTTCTCGCTTTGTATTCAATCATTTCCT 134929 Query 113884 CGCAAAATGGAACGATACTTATAAGGCAACAGGAAAAGGTTTGACTTACAATTCGTGTTC 113943 | |||| | | | || || | || || |||||||| || || | | || || Sbjct 134930 ATCCCTATGGGATCACGCATACAAAGAGACGGGGAAAGGTTTAACATATGGTACATGCTC 134989 Query 113944 TTCTCAATTAAC--CCAATTAAAGAAAGAATTAGTTTGGTTAAAAGAGGTGGACAGCATT 114001 | | || | | ||| | |||||||| || |||||| | ||||| ||||| || ||| Sbjct 134990 TGCCAAACTTCCTGCCA--TGAAGAAAGAGTTTGTTTGGCTCAAAGAAGTGGATAGTATT 135047 Query 114002 GCGATTCAATCTTCACTCAAAAACCTTGCTGATGCTTATTCTCGCTTCTTTAAGAAGCAA 114061 |||||||| || || | |||||||| ||||| ||| | || || || || || ||| Sbjct 135048 GCGATTCAGTCGTCTGTTCGCAACCTTGCGGATGCGTATACACGATTTTTCAAAAAACAA 135107 Query 114062 AACGATGCACCTCGCTTCAAGTCCAAAAAGAATAAGGTTCAATCTTATACAACAAAACAC 114121 || ||| || || ||||| |||||||||||||| | ||||||||||| |||||||| Sbjct 135108 AATAGTGCCCCGCGTTTCAAATCCAAAAAGAATAACATACAATCTTATACCACAAAACAA 135167 Query 114122 ACGAATGGAAACATTGCCATTGTAGGCAACAAAATTAAATTGCCGAAACTTGGTCTTGTT 114181 || |||| ||| |||||| ||| ||| |||||||| || ||||| ||||| || |||||| Sbjct 135168 ACAAATGAAAATATTGCCGTTGAAGGGAACAAAATAAAGTTGCCCAAACTAGGCCTTGTT 135227 Query 114182 CGCTTTGCAAAAAGTCGTGAAGTACATGGTCGTATTCTTAACGCTACTGTTAGACGTAAT 114241 || ||||| ||||||||||||||| | || |||||| | || || ||||||||||| || Sbjct 135228 CGATTTGCCAAAAGTCGTGAAGTAGAGGGACGTATTGTAAATGCGACTGTTAGACGAAAC 135287 Query 114242 CCGAGTGGTAAATATTTTGTTTCCATTCTTGTAGAAACAGAGGTGCAACCATTAGAAAAA 114301 || |||| ||||||||| || | | || |||||||| || ||| | | ||| Sbjct 135288 CCTTCAGGTAGATATTTTGTGTCACTATTAGTTGAAACAGAAGTACAAGAACTTCCGAAA 135347 Query 114302 ACAGGTTCTTCTATTGGTATAGATGTTGGATTAAAAACATTCGCAACTCTTTCAGATGGA 114361 ||| ||||| ||||| |||||||| ||| ||||| ||||| | | | ||||||||| Sbjct 135348 ACACATTCTTACATTGGGATAGATGTAGGACTAAAAGATTTCGCCATTTTGTCAGATGGA 135407 Query 114362 ACACCATACGAAAATCCAAAGTGGTTTCGTAAACTTGAAGAAAAATTAGCAAACGCACAA 114421 ||||| | |||||||| |||| || || | | ||||| || || || || ||||| Sbjct 135408 ACACCCTGTGAAAATCCGAAGTTTTTCCGATCATTAGAAGATAAGTTGGCGAAAGCACAG 135467 Query 114422 CGTATCCTTTCCAGACGCACAAAAGGCGGTTCTAATTGGAATAAGCAACGAATTAAAGTT 114481 | | | ||||| ||| | | ||||| |||| |||||||| |||||| | || || Sbjct 135468 CTTGTTCTTTCTAGAAGAATGAAAGGATCTTCTCGCTGGAATAAACAACGAGTCAAGGTA 135527 Query 114482 GCACGTATTCACGAAAAAATCACCAATGCAAGAACAGATTACTTGCAAAAAATCTCTACC 114541 || | ||||| ||| | || | ||||| |||| |||||||||| | |||||||| || Sbjct 135528 GCTAGAATTCATGAATACATATCAAATGCTAGAAAAGATTACTTGGATAAAATCTCAACT 135587 Query 114542 GAAATCATCAAAAACCACGATGTAATCGGTATTGAAGATTTGCAAGTAAGTAATATGCTA 114601 | |||||||||||||||||||| |||||||| || |||||||||||| |||||| || Sbjct 135588 GGCATCATCAAAAACCACGATGTGATCGGTATAGAGGATTTGCAAGTATTGAATATGTTA 135647 Query 114602 AAGAATCATAAGTTAGCCAAATCTATTAGTGAAGTATCTTGGTATCAATTCAGAACGATG 114661 ||||||||||||||||| ||| | |||||||| ||||| |||| ||||| |||| ||| Sbjct 135648 AAGAATCATAAGTTAGCAAAAGCAATTAGTGAGGTATCATGGTCACAATTTCGAACCATG 135707 Query 114662 CTTGAATACAAAGCGAAATGGTACGGCAAACAAGTTGTTGCGGTATCTAAAACGTTTGCA 114721 | ||||| ||||| |||||||| ||||||||||| ||| ||||| ||||| ||| | Sbjct 135708 TTGGAATATAAAGCAAAATGGTATGGCAAACAAGTCATTGTCGTATCGAAAACATTTCC- 135766 Query 114722 AGTTC---TCAATTGTGTTCGTGTTGCGGATACAAAAACAAAGACGTTAAGAATCTAAAT 114778 ||| ||||| ||||| ||||| ||||| |||| ||||||||||| ||||| || Sbjct 135767 --TTCCAGCCAATTATGTTCTTGTTGTGGATATCAAAATAAAGACGTTAAAAATCTGAAC 135824 Query 114779 CTTCGTGAATGGGATTGCCCATCTTGCGGAACACATCACGATAGAGACATTAACGCAGGA 114838 || ||| |||||||||| || |||||| | ||||| || ||||| || ||||||||| | Sbjct 135825 CTACGTAAATGGGATTGTCCTTCTTGCCGTACACACCATGATAGGGATATTAACGCAAGT 135884 Query 114839 CAAAATATTAAAAATGAAGCGATAAGACTTCTAACCGTAGGGGCTACGGGGTTAGCCTAC 114898 ||| | || |||||||||||||| |||||||||| | || || ||||||||||||| Sbjct 135885 ATCAATCTAAAGAATGAAGCGATAAGGCTTCTAACCGCAAGGACTGCGGGGTTAGCCTAA 135944 Query 114899 TAAATATCTGTTCGATAGAACGGAGTTCGTAGGAATCCCTCACTTCAAACAACCCGTAAG 114958 | ||| |||||||||||| | | |||||||||| | |||| | ||| ||| Sbjct 135945 TCAATTAGAGTTCGATAGAACTCTTTACTTAGGAATCCCCCTCTTCTA--AAC---GAAG 135999 Query 114959 GGTGTTAAGTGGGGGTAGTTCAA 114981 | ||||||||||||||||| Sbjct 136000 TG---AAAGTGGGGGTAGTTCAA 136019 Score = 116 bits (128), Expect = 4e-21 Identities = 141/191 (74%), Gaps = 7/191 (4%) Strand=Plus/Plus Query 114753 AAAACAAAGACGTTAAGAATCTAAATCTTCGTGAATGGGATTGCCCATCTTGCGGAACAC 114812 |||||||||||||||| ||||| ||||| ||||||| ||||| ||||| || ||| Sbjct 175019 AAAACAAAGACGTTAAAAATCTGAATCT-----AATGGGACTGCCCTTCTTGGGGTGCAC 175073 Query 114813 ATCACGATAGAGACATTAACGCAGGACAAAATATTAAAAATGAAGCGATAAGACTTCTAA 114872 |||| ||||| | ||||| || | ||| | || |||| |||||||| | ||||| Sbjct 175074 ATCATGATAGGAATATTAA--CAAGTAGCAATCTAAATGATGATGCGATAAGGCCTCTAA 175131 Query 114873 CCGTAGGGGCTACGGGGTTAGCCTACTAAATATCTGTTCGATAGAACGGAGTTCGTAGGA 114932 ||||| || || | ||| ||||||| ||||| | ||| || |||| | | ||||| Sbjct 175132 CCGTAAGGACTGCAGGGATAGCCTAATAAATTTGATTTCTATCGAACTCTTTACTTAGGA 175191 Query 114933 ATCCCTCACTT 114943 || |||| ||| Sbjct 175192 ATTCCTCCCTT 175202 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/89 (84%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 113452 TAGGCGAGAATACTCCCACCTCAAGGAACGTGAAGGG-CGTAGCCCAGTGAGTAGGTGGG 113510 ||| | |||| ||||| ||||||||| ||||||||| | ||| ||||||||||||||| Sbjct 134630 TAGCCAAGAAGACTCCTTCCTCAAGGAGCGTGAAGGGTCACAGCTCAGTGAGTAGGTGGG 134689 Query 113511 AGATGAATCGCCTTCGGACAAGGGATAGC 113539 |||||||| | ||||| ||||||||| || Sbjct 134690 AGATGAATTGGCTTCGAACAAGGGATGGC 134718 >seq6 Length=382643 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 125012 AACTTGAAAGCTAACCCGGGACTAAAAGTTATTGCAGTGGACCCTAATGTTATTCCATTA 125071 ||||| | |||||| || | ||| | |||||||| || || | ||| ||||||||| Sbjct 339028 AACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTTGATCCAAGTGTCATTCCATTA 339087 Query 125072 GGATCAAAAGTTTATGTTGAGGGATACGGAACTGCCGTAGCTGCCGATACGGGTGGAGCT 125131 || |||||||| | ||||| || |||||| || | |||| ||||| ||||||||| Sbjct 339088 GGTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATCGCTGGTGATACTGGTGGAGCT 339147 Query 125132 ATTAAAGGGAACCGTATTGATGTGTTCATCCCTAGCCAGA-GTGCAGCAGAAAACTTTGG 125190 |||||||| || || || || || || || || | | || || || | || || Sbjct 339148 ATTAAAGGTAATAAAATCGACGTTTTAATGCC-AGATAAAGGTTCATCAAGTAGCTGGGG 339206 Query 125191 GCGTAAAACAGTACAAGTAACGGTTTTAAATTA 125223 ||||||||||| ||| | || ||||| || Sbjct 339207 ACGTAAAACAGTTACAGTTAAAGTATTAAACTA 339239 Score = 89.7 bits (98), Expect = 5e-13 Identities = 92/119 (77%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 125037 AAGTTA-TTGCAGTGGACCCTAATGTTATTCCATTAGGATCAAAAGTTTATGTTGAGGGA 125095 |||||| ||||||| || ||||| |||||| | ||||| | ||||||| ||||| ||| Sbjct 157234 AAGTTAATTGCAGTTGATCCTAAAGTTATTAAACTAGGAACGAAAGTTTGGGTTGAAGGA 157175 Query 125096 TACGGAACTGCCGTAGCTGCCGATACGGGTGGAGCTATTAAAGGGAACCGTATTGATGT 125154 ||||| ||| | |||| ||||| ||||| ||||||||||| || |||||||| Sbjct 157174 TACGGTGATGCAATTGCTGGAGATACAGGTGGGGCTATTAAAGGCAATAAAATTGATGT 157116 >seq8 Length=318055 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 125036 AAAGTTATTGCAGTGGACCCTAATGTTATTCCATTAGGATCAAAAGTTTATGTTGAGGGA 125095 ||| | || || || ||||| || || || ||||||||||| ||||| | || || || Sbjct 28436 AAAATGATCGCTGTTGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGT 28377 Query 125096 TACGGAACTGCCGTAGCTGCCGATACGGGTGGAGCTATTAAAGGGAACCGTATTGAT 125152 |||||| || | |||| ||||| ||||| || |||||||| |||||||||||| Sbjct 28376 TACGGAGAAGCTATCGCTGGAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGAT 28320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 486459688083800