Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_030925.1 Length=138081 Score E Sequences producing significant alignments: (Bits) Value seq19 336 2e-87 >seq19 Length=184000 Score = 336 bits (372), Expect = 2e-87 Identities = 392/524 (75%), Gaps = 4/524 (1%) Strand=Plus/Minus Query 37333 TGTACTTCTATTTCTGC-AAGAATCGATACAAAGTATTTACCACTAGGATTTCGTCTAAC 37391 || |||||| |||| | || ||| || ||||||||| | ||| ||| || |||||||| Sbjct 176420 TGCACTTCTGTTTCAACTAACAAT-GACACAAAGTATCTGCCAGAAGGGTTCCGTCTAAC 176362 Query 37392 AGTAGCATTAAGGATACGACCATGTACTTCACGACTTTTGGCAAAGCGAACAAGACCAAG 37451 ||| ||||| | ||||| || ||||||||||||||||||||||| |||||||| || || Sbjct 176361 AGTCGCATTTACAATACGTCCTTGTACTTCACGACTTTTGGCAAATCGAACAAGGCCTAG 176302 Query 37452 TTTCGGCAATTTGATTTTGCTGTCTACAATGGTAATGTTATTGTTTGTTTCTTTAGTCGT 37511 ||| ||||| || |||||| | || ||| || ||| || | ||||||| ||| || || Sbjct 176301 TTTGGGCAACTTTATTTTGTTCCCTTCAACGGCAATATTTTCATTTGTTTGTTTTGTGGT 176242 Query 37512 GTAGGATTGTACCTTATTCTTTTTAGACTTGAAGCGTGGTGCTTTATTTTGTTTCTTGAA 37571 || |||||||| ||||||||||| || ||||| || || || |||||||||| ||||| Sbjct 176241 ATAAGATTGTACGTTATTCTTTTTGGATTTGAAACGCGGGGCACTATTTTGTTTTTTGAA 176182 Query 37572 GAATCGAGTATACGAATCAGCAAGGTTTTTCAGTGAAGATTGAAGGGCAATGCTATCAAC 37631 ||||| ||||| | ||| |||||||| | || || |||| ||||| ||||| || Sbjct 176181 AAATCGTGTATATGCATCCGCAAGGTTGCGAACAGACGACTGAATCGCAATACTATCCAC 176122 Query 37632 TTCTTTTAGCCATACTAATTTCTTTTTTAGTTG-TGTTAATTCAGCAGAACAAGAATTGT 37690 |||||||||||| || || ||||| || | | | | || ||||| || | | | Sbjct 176121 TTCTTTTAGCCAAAC-AAACTCTTTCTTCATGGCAGGAAGTTTGGCAGAGCATGTACCAT 176063 Query 37691 AAGTTAATCCTTTGCCAGTTTCTTTGTATGTATCGTTCCATTGCCCTAAAAAGCGATTAA 37750 | || || ||||| || ||||||||||||| || | |||| | || || |||| | Sbjct 176062 ATGTCAAACCTTTTCCTGTTTCTTTGTATGCATTATCCCATAGAGATAGGAAATGATTGA 176003 Query 37751 ATACAAAACGACTACATCCGATTGTTTTAGCAATTAAGATTTCCTGTTCTTTGGTTGGAT 37810 ||||||||||| ||| || || |||||| ||||| | | | ||| ||| |||||| Sbjct 176002 ATACAAAACGAGAACAGCCAATCGTTTTATTAATTAGGGTCGCTTGTGCTTGATTTGGAT 175943 Query 37811 AGATACGGAATTTGTATGCTTTGTTGACTAACATTGTTTACACC 37854 ||||||| ||||| |||||| | |||| | |||| || |||| Sbjct 175942 AGATACGAAATTTATATGCTGTATTGATCATCATTCGTTTCACC 175899 Score = 331 bits (366), Expect = 8e-86 Identities = 433/597 (73%), Gaps = 2/597 (0%) Strand=Plus/Minus Query 37261 CCATCAGAAAGAATGGCAAAGTCAGTGATGCCTAAGTCTATACCAATAGATGATTCAGTT 37320 ||||| || | |||||| || || | | |||| ||||| ||||| | || | ||| Sbjct 135406 CCATCTGACAAAATGGCGAAATCTTTTAGTCCTACATCTATCCCAATGTAAGAATGTGTT 135347 Query 37321 TTCTCCAATGACTGTACTTCTATTTCTGCAAGAATCGATACAAAGTATTTACCACTAGGA 37380 ||| | | ||||||||| |||| | | | || ||||| ||| |||| ||| Sbjct 135346 TTCGGAAGTTCTTGTACTTCTGTTTCAACTAATAGTGACACAAAATATCTACCTGAAGGG 135287 Query 37381 TTTCGTCTAACAGTAGCATTAAGGATACGACCATGTACTTCACGACTTTTGGCAAAGCGA 37440 |||||||||||||| ||||| | ||||| || | ||||||||||||||||||||| ||| Sbjct 135286 TTTCGTCTAACAGTCGCATTTACAATACGTCCCTCTACTTCACGACTTTTGGCAAATCGA 135227 Query 37441 ACAAGACCAAGTTTCGGCAATTTGATTTTGCTGTCTACAATGGTAATGTTATTGTTTGTT 37500 ||||| || ||||| ||||| || |||||| | || ||| || ||| || | |||||| Sbjct 135226 ACAAGGCCTAGTTTGGGCAACTTTATTTTGTTCCCTTCAACGGCAATATTTTCATTTGTT 135167 Query 37501 TCTTTAGTCGTGTAGGATTGTACCTTATTCTTTTTAGACTTGAAGCGTGGTGCTTTATTT 37560 | ||| || || || ||||||| ||||||||||| || ||||| || || || ||||| Sbjct 135166 TGTTTTGTGGTATAAGATTGTATGTTATTCTTTTTGGATTTGAAACGCGGGGCACTATTT 135107 Query 37561 TGTTTCTTGAAGAATCGAGTATACGAATCAGCAAGGTTTTTCAGTGAAGATTGAAGGGCA 37620 ||||| ||||| ||||| ||||||| ||| |||||||| | || || |||| ||| Sbjct 135106 TGTTTTTTGAAAAATCGTGTATACGCATCCGCAAGGTTGCGAACAGACGACTGAATCGCA 135047 Query 37621 ATGCTATCAACTTCTTTTAGCCATACTAATTTCTTTTTTAGTTG-TGTTAATTCAGCAGA 37679 || ||||| |||||||| ||||| || || ||||| || | | | | || ||||| Sbjct 135046 ATACTATCCACTTCTTTGAGCCAAAC-AAACTCTTTCTTCATGGCAGGAAGTTTGGCAGA 134988 Query 37680 ACAAGAATTGTAAGTTAATCCTTTGCCAGTTTCTTTGTATGTATCGTTCCATTGCCCTAA 37739 || | | || ||||| ||||| || || |||||||||| | | |||| | || Sbjct 134987 GCATGTACCATATGTTAAACCTTTCCCCGTCTCTTTGTATGCGTGATCCCATAGGGATAG 134928 Query 37740 AAAGCGATTAAATACAAAACGACTACATCCGATTGTTTTAGCAATTAAGATTTCCTGTTC 37799 || |||| |||||||| ||| ||| || || ||||| ||||| ||| | ||| | Sbjct 134927 GAAATGATTGAATACAAAGCGAGAACAACCTATCGTTTTGTTAATTAGAATTGCTTGTGC 134868 Query 37800 TTTGGTTGGATAGATACGGAATTTGTATGCTTTGTTGACTAACATTGTTTACACCTC 37856 || ||||||||||||| ||||| || ||||| || | || |||| | |||||| Sbjct 134867 TTGATTTGGATAGATACGAAATTTATAGGCTTTATTAATTATCATTTGATTCACCTC 134811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441701134670200