Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_031006.1 Length=161552 Score E Sequences producing significant alignments: (Bits) Value seq7 156 4e-33 seq8 140 3e-28 seq6 140 3e-28 seq361 116 4e-21 seq16 111 2e-19 seq5 111 2e-19 >seq7 Length=350003 Score = 156 bits (172), Expect = 4e-33 Identities = 207/284 (73%), Gaps = 5/284 (2%) Strand=Plus/Plus Query 47779 AGCAACAGCATATACTGCGCATCCATCGGAGAACGGTGGTACTTATGGTGGACGAGTACT 47838 ||| ||||| |||||||| ||||| || || |||||| ||||||||||| || | Sbjct 229000 AGCGACAGCGTATACTGCTGATCCAAGTGAAAA---TGGTACATATGGTGGACGCGTTTT 229056 Query 47839 AACGGCAACTGGATTCGACTTAACAGCAAATCCATCAGCTAAGA-TTATCGCAGTTGACC 47897 ||| || | || || ||||| |||||||| | | ||| ||||||||||||||| Sbjct 229057 AACTGCGATGGGGCATGATTTAACGGCAAATCCGA-ATATGAGAATTATCGCAGTTGACC 229115 Query 47898 CACGAGTAATTCCACTAGGCTCTAAGGTTCACGTAGAAGGATACGGAACAGCAATCGCTA 47957 | |||||| ||| |||| ||||| || |||||||| || ||| ||| |||||| Sbjct 229116 CGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAGAAGCGATCGCTG 229175 Query 47958 GTGATACTGGTGGAGCGATTAAAGGTAATAGAATTGATGTGCTAATGCCTTCTCAATCTC 48017 |||||||||| | || |||||||||||| | |||||||| ||||| ||| || | Sbjct 229176 GTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGTTTTAATGGGTTCAAAAAGTA 229235 Query 48018 AGTCAAGTAACTGGGGCGTACGAACTGTTAAAGTAACAATCTTA 48061 | | | || ||||| || |||||||||||| | ||| ||| Sbjct 229236 AAGCTATGAATTGGGGAAGACAAACTGTTAAAGTGAAAATTTTA 229279 >seq8 Length=318055 Score = 140 bits (154), Expect = 3e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 47779 AGCAACAGCATATACTGCGCATCCATCGGAGAACGGTGGTACTTATGGTGGACGAGTACT 47838 ||| ||||||||||| || || || || |||||||| || ||||| || || ||| | Sbjct 28536 AGCTACAGCATATACAGCTCACCCGAGCGAAAACGGTGGCACATATGGCGGCCGTGTATT 28477 Query 47839 AACGGCAACTGGATTCGACTTAACAGCAAATCCATCAGCTAAGATTATCGCAGTTGACCC 47898 ||| |||| || || ||||| || |||||| || || ||||| |||||||| Sbjct 28476 AACTGCAATGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGCTGTTGACCC 28417 Query 47899 ACGAGTAATTCCACTAGGCTCTAAGGTTCACGTAGAAGGATACGGAACAGCAATCGCTAG 47958 |||||| ||| |||| ||||| || |||||||| |||||| ||| |||||| | Sbjct 28416 GAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGCTATCGCTGG 28357 Query 47959 TGATACTGGTGGAGCGATTAAAGGTAATAGAATTGAT 47995 ||||||||||| || ||||||||||| | |||||| Sbjct 28356 AGATACTGGTGGTGCAATTAAAGGTAACCGTATTGAT 28320 >seq6 Length=382643 Score = 140 bits (154), Expect = 3e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 47856 ACTTAACAGCAAATCCATCAGCTAAGATTATCGCAGTTGACCCACGAGTAATTCCACTAG 47915 |||||||||| |||||| || | || |||||||| ||| | || |||||| ||| Sbjct 339029 ACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTTGATCCAAGTGTCATTCCATTAG 339088 Query 47916 GCTCTAAGGTTCACGTAGAAGGATACGGAACAGCAATCGCTAGTGATACTGGTGGAGCGA 47975 | || || || || ||||| |||||| |||||||||| |||||||||||||||| | Sbjct 339089 GTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATCGCTGGTGATACTGGTGGAGCTA 339148 Query 47976 TTAAAGGTAATAGAATTGATGTGCTAATGCCTTCTCAATCTCAGTCAAGTAACTGGGG-C 48034 |||||||||||| ||| || || ||||||| | || | ||||||| |||||| | Sbjct 339149 TTAAAGGTAATAAAATCGACGTTTTAATGCCAGATAAAGGTTCATCAAGTAGCTGGGGAC 339208 Query 48035 GTACGAACTGTTAAAGTAACAATCTTAAACTAGT 48068 ||| ||| |||| ||| | | | |||||||||| Sbjct 339209 GTA-AAACAGTTACAGTTAAAGTATTAAACTAGT 339241 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 47840 ACGGCAACTGGATTCGACTTAACAGCAAATCC-ATCAGCTAAGATTATCGCAGTTGACCC 47898 ||||| ||||| | ||| || | |||||| | || | ||| | || |||||||| || Sbjct 157273 ACGGCGTCTGGAATAGACATAGGAAAAAATCCTAACATC-AAGTTAATTGCAGTTGATCC 157215 Query 47899 ACGAGTAATTCCACTAGGCTCTAAGGTTCACGTAGAAGGATACGGAACAGCAATCGCTAG 47958 ||| ||| |||||| | || ||| || ||||||||||| ||||| ||| | Sbjct 157214 TAAAGTTATTAAACTAGGAACGAAAGTTTGGGTTGAAGGATACGGTGATGCAATTGCTGG 157155 Query 47959 TGATACTGGTGGAGCGATTAAAGGTAATAGAATTGATGTGCT 48000 ||||| ||||| || |||||||| |||| ||||||||| || Sbjct 157154 AGATACAGGTGGGGCTATTAAAGGCAATAAAATTGATGTTCT 157113 >seq361 Length=20807 Score = 116 bits (128), Expect = 4e-21 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 47778 AAGCAACAGCATATACTGCGCATCCATCGGAGAACGGTGGTACTTATGGTGGACGAGTAC 47837 |||| || |||||||| || |||| ||||| |||| | |||||||| || ||| Sbjct 1068 AAGCGACGGCATATACAGCAGATCCGAGTGAGAA---TGGTTCGTATGGTGGTCGTGTAT 1124 Query 47838 TAACGGCAACTGGATTCGACTTAACAGCAAATCCATCAGCTAAGATTATCGCAGTTGACC 47897 |||| |||| || || ||||||||||||||| || | || || ||||| | Sbjct 1125 TAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAATTGCTGTTGATC 1184 Query 47898 CACGAGTAATTCCACTAGGCTCTAAGGTTCACGTAGAAGGATACGGAACAGCAATCGCTA 47957 | ||||||||| || || || || || ||||||||||| ||| ||| || ||| Sbjct 1185 CGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGAAGCGATTGCTG 1244 Query 47958 GTGATACTGGTGGAGCGATTAAAGGTAATAGAATTGATGT 47997 | || || ||||| ||||||||||| ||| | |||||||| Sbjct 1245 GAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGT 1284 >seq16 Length=199848 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 47858 TTAACAGCAAATCCATCAGCTAAGATTA-TCGCAGTTGACCCACGAGTAATTCCACTAGG 47916 ||||| ||||||||| | | | |||| | || || || ||| || || ||| |||| Sbjct 160274 TTAACTGCAAATCCAA-ACATGAAATTAATTGCTGTAGATCCATCTGTTATCCCATTAGG 160332 Query 47917 CTCTAAGGTTCACGTAGAAGGATACGGAACAGCAATCGCTAGTGATACTGGTGGAGCGAT 47976 |||| || | ||||||||||| ||||||||||| ||| | ||||||||| | || || Sbjct 160333 TTCTACTGTATATGTAGAAGGATATGGAACAGCAATTGCTGGAGATACTGGTAGTGCAAT 160392 Query 47977 TAAAGGTAATAGAATTGATGTGCTAATGCCTTCTCAATCTCAGTCAAGTAACTGGGGCGT 48036 ||||| ||| |||||| | ||||||| | | |||| | | | ||||||| Sbjct 160393 AAAAGGGCATATCATTGATCTATTAATGCCAAATTCAGCTCAAGCTAATGACTGGGGTAG 160452 Query 48037 ACGAACTGTTAAAGTAACAATCTTAAACTA 48066 | |||| |||||||| | ||| |||||||| Sbjct 160453 AAGAACAGTTAAAGTTAAAATTTTAAACTA 160482 >seq5 Length=406804 Score = 111 bits (122), Expect = 2e-19 Identities = 284/428 (66%), Gaps = 6/428 (1%) Strand=Plus/Plus Query 33812 TTTATCTAGATGGTAAAAATAAATATTATAATACATGGAATAAGACAGCGATAAAAGATG 33871 ||||| |||| |||||||||||||||||||| || ||||| || ||| ||||||||| Sbjct 286186 TTTATTTAGACGGTAAAAATAAATATTATAACACTTGGAACAAAACACAAATAAAAGATA 286245 Query 33872 GAGTAGTTCTCAACTGGACAGGTTCTCATAAAGGTGTAGGTATCCGATTCTACTCTGGAG 33931 | || |||| ||||| | | |||||||| || || || ||||||| | Sbjct 286246 TAAATATTATCAATTGGACGGAAACGAATAAAGGTACCGGAATTTCTTTATACTCTGCTG 286305 Query 33932 GAACTGACCATGAGATTTCATTTGTAGATACATCG--AATATCAAACTAGTAGGTTTAAG 33989 ||| || |||| ||||| ||||| || ||| ||||| ||| | ||||| | Sbjct 286306 GAAAAGAAAATGAAATTTCGTTTGT--TAACTTCGAAAATATTAAAGTTGTAGGAATGGA 286363 Query 33990 AAAAGGTATAGAACTAGAAGCTAAGTCTCC-AGCTACTGGAATGGCATGGGTGAACGCTA 34048 || || | || ||| ||| || || ||| || ||| || ||| | || || | Sbjct 286364 AACTGGACTGAAATTAGTAGCGAAAAAACCGAGC-ACCGGACAAGCTTGGATAAATGCCA 286422 Query 34049 ACCGATTCAATAACATCTCTATAGAAGACTGTGTAGAAATGATTACGATTGACAGTAGCG 34108 | || || | ||| | ||| |||||||||||||| | |||||| || || ||| | Sbjct 286423 ATCGTTTTATGAACTTTTCTTTAGAAGACTGTGTAAATATGATTTATATGGATAGTCAAG 286482 Query 34109 AAACAATACCGAACGAATGTAGCGGTAACATCTTCTCAGGTTTGCAACTACAACCATCTA 34168 ||| | || || ||| ||| || || || || | ||| |||| || || | Sbjct 286483 TAACTACGCCAAATGAAATTAGTGGGAATCAATTTACAAACCTTCAAATACAGCCTTCAA 286542 Query 34169 CTGCAACTACAAAAGTCTTAAAGGTAAGTGGACAGCATAACCGATTCGATGGTATGCTCT 34228 | ||| | || | || |||||||||| || ||||| ||| |||| ||| | | Sbjct 286543 ATAAAACAAAAAGCATTATACAGGTAAGTGGTCAACATAATGAATTTCATGGGATGGTGT 286602 Query 34229 GGGATATA 34236 ||||| || Sbjct 286603 GGGATTTA 286610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516803222686400