Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_031012.1 Length=162151 Score E Sequences producing significant alignments: (Bits) Value seq7 147 2e-30 seq16 140 3e-28 seq6 136 4e-27 seq361 132 5e-26 seq8 122 9e-23 seq5 109 6e-19 >seq7 Length=350003 Score = 147 bits (162), Expect = 2e-30 Identities = 205/285 (72%), Gaps = 7/285 (2%) Strand=Plus/Plus Query 46949 AGCAACCGCCTATACTGCCGACCCAGCTGAGAATGGCGGTACGTATGGTGGACGAGTACT 47008 ||| || || |||||||| || ||| ||| ||||| ||| ||||||||||| || | Sbjct 229000 AGCGACAGCGTATACTGCTGATCCAAGTGAAAATGG---TACATATGGTGGACGCGTTTT 229056 Query 47009 GACAGCTACAGGTCTTGACTTAACAGCAAATCC--ATCAGCTAAAGTTATCGCAGTTGAC 47066 || || | || | ||| ||||| |||||||| || | || |||||||||||||| Sbjct 229057 AACTGCGATGGGGCATGATTTAACGGCAAATCCGAATATGAGAA--TTATCGCAGTTGAC 229114 Query 47067 CCACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCA 47126 || |||||| |||||||| |||||||| |||||||| || ||| ||| || || Sbjct 229115 CCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAGAAGCGATCGCT 229174 Query 47127 TCAGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCT 47186 |||||||| | || || ||||| ||||| || ||||| |||||| ||| ||| | Sbjct 229175 GGTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGTTTTAATGGGTTCAAAAAGT 229234 Query 47187 CAGTCTAGTAACTGGGGCGTACGAACAGTAAAAGTAACAATCTTA 47231 | ||| || ||||| || ||| || ||||| | ||| ||| Sbjct 229235 AAAGCTATGAATTGGGGAAGACAAACTGTTAAAGTGAAAATTTTA 229279 >seq16 Length=199848 Score = 140 bits (154), Expect = 3e-28 Identities = 240/344 (70%), Gaps = 12/344 (3%) Strand=Plus/Plus Query 46902 GAGTCTTATACAGAGACTACACCA---CAAGGT--AAAACAATCGTA-GTGAAAGCAACC 46955 |||||| | | || || | |||| |||||| |||| ||| || || | ||||||| Sbjct 160142 GAGTCTAAGCCTGATACGAAACCAACTCAAGGTGGAAAAGAATTTTACGTAACAGCAACC 160201 Query 46956 GCCTATACTGCCGACCCAGCTGAGAATGGCGGTACGTATGGTGGACGAGTACTGACAGCT 47015 || ||||| || |||||| |||| || ||| || |||| | ||| | | || Sbjct 160202 GCTTATACAGCTGACCCATCTGAAAACGGCTATAAACCGGGTGAAACTGTA---AAATCT 160258 Query 47016 AC---AGGTCTTGACTTAACAGCAAATCCATCAGCTAAAGTTATCGCAGTTGACCCACGA 47072 | ||| | | | ||||| ||||||||| ||| | || || || || ||| Sbjct 160259 AAGTTAGGACATAATTTAACTGCAAATCCAAACATGAAATTAATTGCTGTAGATCCATCT 160318 Query 47073 GTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCATCAGAT 47132 || || |||||||| |||| || ||||||||||||| |||||||||||||| |||| Sbjct 160319 GTTATCCCATTAGGTTCTACTGTATATGTAGAAGGATATGGAACAGCAATTGCTGGAGAT 160378 Query 47133 ACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCTCAGTCT 47192 |||||| | || || ||||| || || ||| |||||||||| | | |||| || Sbjct 160379 ACTGGTAGTGCAATAAAAGGGCATATCATTGATCTATTAATGCCAAATTCAGCTCAAGCT 160438 Query 47193 AGTAACTGGGGCGTACGAACAGTAAAAGTAACAATCTTAAACTA 47236 | | ||||||| | ||||||| ||||| | ||| |||||||| Sbjct 160439 AATGACTGGGGTAGAAGAACAGTTAAAGTTAAAATTTTAAACTA 160482 >seq6 Length=382643 Score = 136 bits (150), Expect = 4e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 47026 ACTTAACAGCAAATCCATCAGCTAAAGTTATCGCAGTTGACCCACGAGTAATTCCATTAG 47085 |||||||||| |||||| ||| | || |||||||| ||| | || |||||||||| Sbjct 339029 ACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTTGATCCAAGTGTCATTCCATTAG 339088 Query 47086 GCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCATCAGATACTGGTGGAGCTA 47145 | || ||||| || ||||| |||||| |||||| || |||||||||||||||| Sbjct 339089 GTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATCGCTGGTGATACTGGTGGAGCTA 339148 Query 47146 TCAAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCTCAGTCTAGTAACTGGGG-C 47204 | ||||| ||| |||||| || |||||||| |||| | || |||| |||||| | Sbjct 339149 TTAAAGGTAATAAAATCGACGTTTTAATGCCAGATAAAGGTTCATCAAGTAGCTGGGGAC 339208 Query 47205 GTACGAACAGTAAAAGTAACAATCTTAAACTAGT 47238 ||| |||||| | ||| | | | |||||||||| Sbjct 339209 GTA-AAACAGTTACAGTTAAAGTATTAAACTAGT 339241 >seq361 Length=20807 Score = 132 bits (146), Expect = 5e-26 Identities = 164/224 (73%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 46948 AAGCAACCGCCTATACTGCCGACCCAGCTGAGAATGGCGGTACGTATGGTGGACGAGTAC 47007 |||| || || ||||| || || || ||||||||| | |||||||||| || ||| Sbjct 1068 AAGCGACGGCATATACAGCAGATCCGAGTGAGAATGG---TTCGTATGGTGGTCGTGTAT 1124 Query 47008 TGACAGCTACAGGTCTTGACTTAACAGCAAATCCATCAGCTAAAGTTATCGCAGTTGACC 47067 | || || | || | ||| ||||||||||||||| ||||| || || ||||| | Sbjct 1125 TAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAATTGCTGTTGATC 1184 Query 47068 CACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCAT 47127 | ||||||||| | || || ||||| ||||||||||| ||| ||| ||||| Sbjct 1185 CGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGAAGCGATTGCTG 1244 Query 47128 CAGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTA 47171 ||| || ||||| || || ||||||||||| || ||||||||| Sbjct 1245 GAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGTATTA 1288 >seq8 Length=318055 Score = 122 bits (134), Expect = 9e-23 Identities = 163/224 (73%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 46949 AGCAACCGCCTATACTGCCGACCC-AGCTGAGAATGGCGGTACGTATGGTGGACGAGTAC 47007 ||| || || ||||| || |||| ||| || || || || || ||||| || || ||| Sbjct 28536 AGCTACAGCATATACAGCTCACCCGAGC-GAAAACGGTGGCACATATGGCGGCCGTGTAT 28478 Query 47008 TGACAGCTACAGGTCTTGACTTAACAGCAAATCCATCAGCTAAAGTTATCGCAGTTGACC 47067 | || || | |||| ||| ||||| || |||||| ||| | ||||| ||||||| Sbjct 28477 TAACTGCAATGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGCTGTTGACC 28418 Query 47068 CACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCAT 47127 | |||||| |||||||| |||||||| |||||||| |||||| ||| || || Sbjct 28417 CGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGCTATCGCTG 28358 Query 47128 CAGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTA 47171 |||||||||||| || || ||||| || || || ||| | ||| Sbjct 28357 GAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGATATCTTA 28314 >seq5 Length=406804 Score = 109 bits (120), Expect = 6e-19 Identities = 284/426 (67%), Gaps = 8/426 (2%) Strand=Plus/Plus Query 33289 TTTACCTTGATGGTAAAAATAAATATTACAATACATGGAATAAGACATCTATAAAAGATG 33348 |||| | || ||||||||||||||||| || || ||||| || ||| ||||||||| Sbjct 286186 TTTATTTAGACGGTAAAAATAAATATTATAACACTTGGAACAAAACACAAATAAAAGATA 286245 Query 33349 GTGTCGTTCTCAACTGGACAGGTTCTCATAAAGGTGTTGGTATCCGATTCTACTCTGGAG 33408 || |||| ||||| | | |||||||| || || || ||||||| | Sbjct 286246 TAAATATTATCAATTGGACGGAAACGAATAAAGGTACCGGAATTTCTTTATACTCTGCTG 286305 Query 33409 GAACTGACCATGAGATTTCATTCGTAGATACATC--AAACATCAAACTAGTAGGTTTAAG 33466 ||| || |||| ||||| || || | | || ||| || ||| | ||||| | | Sbjct 286306 GAAAAGAAAATGAAATTTCGTTTGTTAA--CTTCGAAAATATTAAAGTTGTAGGAATG-G 286362 Query 33467 AAAAGGTATTGAACT-AGAAGCTAAAGCTCC-AGCTACCGGAATGGCTTGGGTGAACGCA 33524 ||| | | |||| | || ||| ||| || ||| |||||| |||||| | || || Sbjct 286363 AAACTGGACTGAAATTAGTAGCGAAAAAACCGAGC-ACCGGACAAGCTTGGATAAATGCC 286421 Query 33525 AATCGTTTCGATAAGATATCAATTGAAGACTGTGTAGAAATGATTACGATTGACAGCAGT 33584 |||||||| || | || | |||||||||||| | |||||| || || || Sbjct 286422 AATCGTTTTATGAACTTTTCTTTAGAAGACTGTGTAAATATGATTTATATGGATAGTCAA 286481 Query 33585 GAGACAATCCCGAACGAATGTAGTGGTAATACTTTCTCCAATCTTCAACTACAGCCATCT 33644 | || | || || ||| |||||| ||| || | || |||||| ||||||| || Sbjct 286482 GTAACTACGCCAAATGAAATTAGTGGGAATCAATTTACAAACCTTCAAATACAGCCTTCA 286541 Query 33645 ACCGCAACAACAAAAGTTTTAAAAGTAAGTGGACAGCATAACCGATTCGATGGTATGCTT 33704 | ||||| || || || | |||||||| || ||||| ||| |||| ||| | Sbjct 286542 AATAAAACAAAAAGCATTATACAGGTAAGTGGTCAACATAATGAATTTCATGGGATGGTG 286601 Query 33705 TGGGAT 33710 |||||| Sbjct 286602 TGGGAT 286607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518719892224200