Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_031015.1 Length=26504 Score E Sequences producing significant alignments: (Bits) Value seq7 307 2e-79 seq4 257 3e-64 >seq7 Length=350003 Score = 307 bits (340), Expect = 2e-79 Identities = 396/542 (73%), Gaps = 6/542 (1%) Strand=Plus/Plus Query 22640 ATGGGCAATATTGTAGATATTTCTAAATGGAATGGTGATATCAATTGGGATACTGCTAAA 22699 ||||| ||||||| |||||||| ||||||||||| || || || ||||||| || | Sbjct 348725 ATGGGTTATATTGTGGATATTTCGAAATGGAATGGCGACATTAACTGGGATATCGCAGCA 348784 Query 22700 CCTTATATTGATTTTATTATAGCACGTGTTCAAGATGGTAGTAATTATCGTGACCCACGT 22759 || | | ||||| | || |||||||| ||||||||| || ||| || || Sbjct 348785 CCACAATTGGATTTCGTAATTGCACGTGTGCAAGATGGTTCAAACTATGTAGATCCTTTA 348844 Query 22760 TATAATGGTTACGTTGCTGATATGAAACATAAAGGAATA--CCTTTTGGTAGCTATGCTT 22817 ||||| ||| || | |||||| | |||||| || ||||||| ||||| | Sbjct 348845 TATAAAAATTATGTACAAGCAATGAAAGC--ACGGAATATTCCGTTTGGTAATTATGCGT 348902 Query 22818 TTTGTAGATTCGTATCTATTAATGATGCTAAGAAGGAAGCTCAAGATTTCTGGGAACGTG 22877 | ||| | ||||| || | | ||||| || ||||| ||| || ||| | |||| Sbjct 348903 TCTGTCGTTTCGTTTCAGTAGAGGATGCACGGATAGAAGCAAGAGACTTTTGGAACCGTG 348962 Query 22878 GTGATAAATCCTCTACCGTTTGGGTGGCGGATGTTGAAGTGAAGACGATGGATGATATGA 22937 |||||||| | || |||||||| || || || ||||| | || ||| | ||||||| Sbjct 348963 GTGATAAAAATGCAACAGTTTGGGTAGCTGACGTAGAAGTAAGAACAATGAACGATATGA 349022 Query 22938 GAGCAGGAACACAAGCTTTTATTGATGAATTACGTCGATTGGGAGCTAAGAAAGTTGGAT 22997 |||| || ||||||||||||||||||||||||| |||| ||||||||||| | ||| | Sbjct 349023 GAGCGGGTGCACAAGCTTTTATTGATGAATTACGCAGATTAGGAGCTAAGAAGGCTGGTT 349082 Query 22998 TATATGTTGGTCATCATATGTATGAGCCTTTTGGTATGAGTCAAGTTCAA-TCTGACTTT 23056 ||||| ||| |||||||||||||| || ||||| ||| | || ||||| ||||| ||| Sbjct 349083 TATATATTGCTCATCATATGTATGCTCCATTTGGAATG-GCAAATTTCAATTCTGATTTT 349141 Query 23057 GTATGGATTCCGCGATATGGTGGTAGTAAACCTAAATATCCTTGCGATATTTGGCAATAC 23116 ||||||||||| || || ||||||| ||||| ||| | || ||||||||||||||| Sbjct 349142 GTATGGATTCCTCGTTACGGTGGTAACAAACCGGCGTATTCATGTGATATTTGGCAATAC 349201 Query 23117 ACTGAAACTGGTCACACACCGGGAATTGGTAAATGTGATTTGAATCAATTGATTGGTAGT 23176 || ||||| || | | || || || || |||||||| ||| | ||||||| | | Sbjct 349202 ACAGAAACAGGGAATGTGGCTGGTATCGGCAAGTGTGATTTAAATAAGCTGATTGGAAAT 349261 Query 23177 AA 23178 || Sbjct 349262 AA 349263 >seq4 Length=425142 Score = 257 bits (284), Expect = 3e-64 Identities = 376/529 (71%), Gaps = 2/529 (0%) Strand=Plus/Plus Query 22639 TATGGGCAATATTGTAGATATTTCTAAATGGAATGGTGATATCAATTGGGATACTGCTAA 22698 |||||| |||||||||||||||| ||||||||||| ||| |||||||||| ||| Sbjct 333744 TATGGGGTATATTGTAGATATTTCAAAATGGAATGGAACTATTAATTGGGATATTGCAGC 333803 Query 22699 ACCTTATATTGATTTTATTATAGCACGTGTTCAAGATGGTAGTAATTATCGTGACCCACG 22758 | || | | ||||| | || || | ||||||||||| |||| | ||| Sbjct 333804 ATCTCAGTTAGATTTAGTGATTGCTAGAGTTCAAGATGGCTCTAAT-ACGGTGGATTTTA 333862 Query 22759 T-TATAATGGTTACGTTGCTGATATGAAACATAAAGGAATACCTTTTGGTAGCTATGCTT 22817 | ||| | ||| ||| ||| |||||| | | | || || || |||| ||||||| Sbjct 333863 TGTATCAAAATTATGTTAGTGAAATGAAAAAGCATAGTATCCCATTCGGTAATTATGCTT 333922 Query 22818 TTTGTAGATTCGTATCTATTAATGATGCTAAGAAGGAAGCTCAAGATTTCTGGGAACGTG 22877 |||| | || |||||||| |||||| ||||| || || |||||||| ||| | |||| Sbjct 333923 TTTGCCGTTTTATATCTATTGCTGATGCAAAGAAAGAGGCACAAGATTTTTGGAATCGTG 333982 Query 22878 GTGATAAATCCTCTACCGTTTGGGTGGCGGATGTTGAAGTGAAGACGATGGATGATATGA 22937 ||||| |||| ||| ||||||| ||||| | ||||| | ||||||| |||||| Sbjct 333983 GTGATCAATCTGCTAAGTTTTGGGTAGCGGACATAGAAGTTCAAACGATGGTAGATATGC 334042 Query 22938 GAGCAGGAACACAAGCTTTTATTGATGAATTACGTCGATTGGGAGCTAAGAAAGTTGGAT 22997 || || ||||| || ||||||||||||||||| || || || | | ||||| |||| Sbjct 334043 AAGGCGGGACACAGGCATTTATTGATGAATTACGCCGTTTAGGTGTGGAAAAAGTAGGAT 334102 Query 22998 TATATGTTGGTCATCATATGTATGAGCCTTTTGGTATGAGTCAAGTTCAATCTGACTTTG 23057 |||| || || ||||| | |||| | ||||| || | || || |||| || Sbjct 334103 TATACGTAGGACATCACACGTATTTATCATTTGGAGCATGTAATATTGAAGCTGATTTCA 334162 Query 23058 TATGGATTCCGCGATATGGTGGTAGTAAACCTAAATATCCTTGCGATATTTGGCAATACA 23117 ||||||| || || ||||| || | ||| | |||||| |||||||| |||||||| | Sbjct 334163 TATGGATCCCTCGTTATGGAGGGAATAAGTCAGCATATCCATGCGATATGTGGCAATATA 334222 Query 23118 CTGAAACTGGTCACACACCGGGAATTGGTAAATGTGATTTGAATCAATT 23166 | || | || | || || ||||| ||||||||| |||||| ||| Sbjct 334223 CGGATTCAGGGAATGTTCCTGGTATTGGGAAATGTGATCTGAATCGATT 334271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 84689067825845