Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_031024.1 Length=162308 Score E Sequences producing significant alignments: (Bits) Value seq16 140 3e-28 seq7 129 6e-25 seq5 123 3e-23 seq6 120 3e-22 seq8 114 1e-20 seq361 111 2e-19 >seq16 Length=199848 Score = 140 bits (154), Expect = 3e-28 Identities = 161/213 (76%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 48262 TTAACAGCAAATCCATCAGCTAAGATTA-TCGCAGTTGACCCACGAGTAATTCCACTAGG 48320 ||||| ||||||||| | | | |||| | || || || ||| || || ||| |||| Sbjct 160274 TTAACTGCAAATCCAA-ACATGAAATTAATTGCTGTAGATCCATCTGTTATCCCATTAGG 160332 Query 48321 TTCTAAGGTGCACGTAGAGGGATATGGAACAGCAATTGCTAGCGATACTGGTGGAGCGAT 48380 ||||| || | ||||| ||||||||||||||||||||| | ||||||||| | || || Sbjct 160333 TTCTACTGTATATGTAGAAGGATATGGAACAGCAATTGCTGGAGATACTGGTAGTGCAAT 160392 Query 48381 TAAAGGTAATAGAATTGATGTGCTAATGCCA---TCAGCCTCTCAGTCTAATAACTGGGG 48437 ||||| ||| |||||| | |||||||| |||| |||| ||||| ||||||| Sbjct 160393 AAAAGGGCATATCATTGATCTATTAATGCCAAATTCAG---CTCAAGCTAATGACTGGGG 160449 Query 48438 TGTACGAACAGTTAAAGTAACAATCTTAAACTA 48470 | | ||||||||||||| | ||| |||||||| Sbjct 160450 TAGAAGAACAGTTAAAGTTAAAATTTTAAACTA 160482 >seq7 Length=350003 Score = 129 bits (142), Expect = 6e-25 Identities = 201/284 (71%), Gaps = 5/284 (2%) Strand=Plus/Plus Query 48183 AGCAACAGCTTACACTGCACATCCATCGGAGAACGGCGGTACTTATGGTGGACGAGTACT 48242 ||| ||||| || ||||| ||||| || || || ||| ||||||||||| || | Sbjct 229000 AGCGACAGCGTATACTGCTGATCCAAGTGAAAATGG---TACATATGGTGGACGCGTTTT 229056 Query 48243 AACAGCAACTGGATTCGACTTAACAGCAAATCCATCAGCTAAGA-TTATCGCAGTTGACC 48301 ||| || | || || ||||| |||||||| | | ||| ||||||||||||||| Sbjct 229057 AACTGCGATGGGGCATGATTTAACGGCAAATCCGA-ATATGAGAATTATCGCAGTTGACC 229115 Query 48302 CACGAGTAATTCCACTAGGTTCTAAGGTGCACGTAGAGGGATATGGAACAGCAATTGCTA 48361 | |||||| ||| |||| ||||| || ||||| || |||||| ||| || ||| Sbjct 229116 CGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAGAAGCGATCGCTG 229175 Query 48362 GCGATACTGGTGGAGCGATTAAAGGTAATAGAATTGATGTGCTAATGCCATCAGCCTCTC 48421 | |||||||| | || |||||||||||| | |||||||| ||||| ||| | Sbjct 229176 GTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGTTTTAATGGGTTCAAAAAGTA 229235 Query 48422 AGTCTAATAACTGGGGTGTACGAACAGTTAAAGTAACAATCTTA 48465 | ||| || ||||| || ||| |||||||| | ||| ||| Sbjct 229236 AAGCTATGAATTGGGGAAGACAAACTGTTAAAGTGAAAATTTTA 229279 >seq5 Length=406804 Score = 123 bits (136), Expect = 3e-23 Identities = 285/425 (67%), Gaps = 6/425 (1%) Strand=Plus/Plus Query 33846 TTTATTTAGATGGTAAAAATAAATATTACAATACATGGAATAAGACAGCGATAAAAGATG 33905 |||||||||| ||||||||||||||||| || || ||||| || ||| ||||||||| Sbjct 286186 TTTATTTAGACGGTAAAAATAAATATTATAACACTTGGAACAAAACACAAATAAAAGATA 286245 Query 33906 GAGTAGTTCTCAACTGGACAGGTTCGCATAAAGGTGTAGGTATCCGATTCTACTCTGGAG 33965 | || |||| ||||| | || |||||||| || || || ||||||| | Sbjct 286246 TAAATATTATCAATTGGACGGAAACGAATAAAGGTACCGGAATTTCTTTATACTCTGCTG 286305 Query 33966 GAACTGACCATGAGATTTCATTCGTAGATACATCG--AATATCAAACTAGTAGGTTTAAG 34023 ||| || |||| ||||| || || || ||| ||||| ||| | ||||| | Sbjct 286306 GAAAAGAAAATGAAATTTCGTTTGT--TAACTTCGAAAATATTAAAGTTGTAGGAATGGA 286363 Query 34024 AAAAGGTATCGAGCTAGAAGCTAAAACTCC-AGCTACTGGAATGGCTTGGGTGAATGCAA 34082 || || | | ||| ||| |||| || ||| || ||| |||||| | ||||| | Sbjct 286364 AACTGGACTGAAATTAGTAGCGAAAAAACCGAGC-ACCGGACAAGCTTGGATAAATGCCA 286422 Query 34083 ATCGTTTCGATAAGATATCAATTGAAGATTGCATAGAGATGATTACGATTGATAGCAGCG 34142 ||||||| || | || | ||||| || || | |||||| || ||||| | Sbjct 286423 ATCGTTTTATGAACTTTTCTTTAGAAGACTGTGTAAATATGATTTATATGGATAGTCAAG 286482 Query 34143 AGACAATCCCGAATGAATGTAGTGGTAATACTTTCTCCAATCTTCAATTACAGCCATCTA 34202 || | || |||||| |||||| ||| || | || |||||| ||||||| || | Sbjct 286483 TAACTACGCCAAATGAAATTAGTGGGAATCAATTTACAAACCTTCAAATACAGCCTTCAA 286542 Query 34203 CCGCAACAACAAAAGTCTTAAAAGTAAGTGGACAGCATAACCGATTCGATGGTATGCTCT 34262 ||||| || | || | |||||||| || ||||| ||| |||| ||| | | Sbjct 286543 ATAAAACAAAAAGCATTATACAGGTAAGTGGTCAACATAATGAATTTCATGGGATGGTGT 286602 Query 34263 GGGAT 34267 ||||| Sbjct 286603 GGGAT 286607 >seq6 Length=382643 Score = 120 bits (132), Expect = 3e-22 Identities = 206/293 (70%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 48183 AGCAACAGCTTACACTGCACATCCATCGGAGAACGGCGGTACTTATGGTGGACGAGTACT 48242 ||||||||||||||| ||| ||||| || || || || || | | |||| Sbjct 338952 AGCAACAGCTTACACAGCAGATCCACTTGAAAATGGTTATAAAGCAGGCGACCAAGTAAA 339011 Query 48243 AACAGCAACTGGATTCGACTTAACAGCAAATCCATCAGCTAAGATTATCGCAGTTGACCC 48302 | |||| || | |||||||||| |||||| || | || |||||||| || Sbjct 339012 ATCAGCTTTAGGCCACAACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTTGATCC 339071 Query 48303 ACGAGTAATTCCACTAGGTTCTAAGGTGCACGTAGAGGGATATGGAACAGCAATTGCTAG 48362 | | || |||||| ||||||| || || || || || || ||| |||||| ||| | Sbjct 339072 AAGTGTCATTCCATTAGGTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATCGCTGG 339131 Query 48363 CGATACTGGTGGAGCGATTAAAGGTAATAGAATTGATGTGCTAATGCC--ATCAGCCTCT 48420 |||||||||||||| ||||||||||||| ||| || || ||||||| || | | | Sbjct 339132 TGATACTGGTGGAGCTATTAAAGGTAATAAAATCGACGTTTTAATGCCAGATAAAGGT-T 339190 Query 48421 CAGTCTAATAACTGGGG-TGTACGAACAGTTAAAGTAACAATCTTAAACTAGT 48472 || || | || |||||| ||| |||||||| ||| | | | |||||||||| Sbjct 339191 CA-TCAAGTAGCTGGGGACGTA-AAACAGTTACAGTTAAAGTATTAAACTAGT 339241 >seq8 Length=318055 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 48177 AGTTAAAGCAACAGCTTACACTGCACATCCATCGGAGAACGGCGGTACTTATGGTGGACG 48236 |||| ||| ||||| || || || || || || ||||| || || ||||| || || Sbjct 28542 AGTTGTAGCTACAGCATATACAGCTCACCCGAGCGAAAACGGTGGCACATATGGCGGCCG 28483 Query 48237 AGTACTAACAGCAACTGGATTCGACTTAACAGCAAATCCATCAGCTAAGATTATCGCAGT 48296 ||| |||| |||| || || ||||| || |||||| || || ||||| || Sbjct 28482 TGTATTAACTGCAATGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGCTGT 28423 Query 48297 TGACCCACGAGTAATTCCACTAGGTTCTAAGGTGCACGTAGAGGGATATGGAACAGCAAT 48356 |||||| |||||| ||| |||| ||||| || ||||| || || ||| ||| || Sbjct 28422 TGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGCTAT 28363 Query 48357 TGCTAGCGATACTGGTGGAGCGATTAAAGGTAATAGAATTGAT 48399 ||| | ||||||||||| || ||||||||||| | |||||| Sbjct 28362 CGCTGGAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGAT 28320 >seq361 Length=20807 Score = 111 bits (122), Expect = 2e-19 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 48182 AAGCAACAGCTTACACTGCACATCCATCGGAGAACGGCGGTACTTATGGTGGACGAGTAC 48241 |||| || || || || ||| |||| ||||| || | | |||||||| || ||| Sbjct 1068 AAGCGACGGCATATACAGCAGATCCGAGTGAGAATGG---TTCGTATGGTGGTCGTGTAT 1124 Query 48242 TAACAGCAACTGGATTCGACTTAACAGCAAATCCATCAGCTAAGATTATCGCAGTTGACC 48301 |||| |||| || || ||||||||||||||| || | || || ||||| | Sbjct 1125 TAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAATTGCTGTTGATC 1184 Query 48302 CACGAGTAATTCCACTAGGTTCTAAGGTGCACGTAGAGGGATATGGAACAGCAATTGCTA 48361 | ||||||||| || || || || || ||||| ||||||||| ||| |||||| Sbjct 1185 CGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGAAGCGATTGCTG 1244 Query 48362 GCGATACTGGTGGAGCGATTAAAGGTAATAGAATTGATGT 48401 | || || ||||| ||||||||||| ||| | |||||||| Sbjct 1245 GAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGT 1284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519222258029600