Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_031032.1 Length=24320 Score E Sequences producing significant alignments: (Bits) Value seq7 320 3e-83 seq4 253 3e-63 >seq7 Length=350003 Score = 320 bits (354), Expect = 3e-83 Identities = 399/542 (74%), Gaps = 6/542 (1%) Strand=Plus/Plus Query 20454 ATGGGTAATATTGTAGATATTTCTAAATGGAATGGTGATATCAATTGGGACACAGCTAAA 20513 |||||| ||||||| |||||||| ||||||||||| || || || ||||| | || | Sbjct 348725 ATGGGTTATATTGTGGATATTTCGAAATGGAATGGCGACATTAACTGGGATATCGCAGCA 348784 Query 20514 CCTTATATTGATTTTATTATAGCTCGTGTTCAAGATGGTAGTAATTATCGTGATCCTCGT 20573 || | | ||||| | || || ||||| ||||||||| || ||| |||||| Sbjct 348785 CCACAATTGGATTTCGTAATTGCACGTGTGCAAGATGGTTCAAACTATGTAGATCCTTTA 348844 Query 20574 TATAATGGTTACGTTGCTGATATGAAACGTAAAGGAATA--CCTTTTGGTAACTATGCTT 20631 ||||| ||| || | |||||| | |||||| || |||||||| ||||| | Sbjct 348845 TATAAAAATTATGTACAAGCAATGAAAGC--ACGGAATATTCCGTTTGGTAATTATGCGT 348902 Query 20632 TTTGTAGATTCGTTTCTATTAATGATGCTAAGAAAGAAGCGCAAGATTTCTGGGATCGTG 20691 | ||| | |||||||| | | ||||| || |||||| ||| || ||| | |||| Sbjct 348903 TCTGTCGTTTCGTTTCAGTAGAGGATGCACGGATAGAAGCAAGAGACTTTTGGAACCGTG 348962 Query 20692 GAGATAAATCCTCTACCGTTTGGGTGGCAGATGTTGAAGTGAAAACGATGGATGATATGA 20751 | |||||| | || |||||||| || || || ||||| | ||| ||| | ||||||| Sbjct 348963 GTGATAAAAATGCAACAGTTTGGGTAGCTGACGTAGAAGTAAGAACAATGAACGATATGA 349022 Query 20752 GAGCGGGAACGCAAGCTTTCATTGATGAATTACGTAGATTAGGTGCTAAGAAAGTTGGTT 20811 ||||||| | |||||||| |||||||||||||| |||||||| |||||||| | ||||| Sbjct 349023 GAGCGGGTGCACAAGCTTTTATTGATGAATTACGCAGATTAGGAGCTAAGAAGGCTGGTT 349082 Query 20812 TATATGTAGGTCATCATATGTATGAGTCTTTTGGTATGAGTCAAGTTCAA-TCTGACTTT 20870 ||||| | | |||||||||||||| | ||||| ||| | || ||||| ||||| ||| Sbjct 349083 TATATATTGCTCATCATATGTATGCTCCATTTGGAATG-GCAAATTTCAATTCTGATTTT 349141 Query 20871 GTATGGATTCCACGATATGGTGGTAGTAAACCTAAATATCCTTGTGATATTTGGCAATAC 20930 ||||||||||| || || ||||||| ||||| ||| | |||||||||||||||||| Sbjct 349142 GTATGGATTCCTCGTTACGGTGGTAACAAACCGGCGTATTCATGTGATATTTGGCAATAC 349201 Query 20931 ACTGAAACTGGTCACACACCGGGAATTGGTAAATGCGATTTGAATCAATTGATTGGTAGT 20990 || ||||| || | | || || || || || ||||| ||| | ||||||| | | Sbjct 349202 ACAGAAACAGGGAATGTGGCTGGTATCGGCAAGTGTGATTTAAATAAGCTGATTGGAAAT 349261 Query 20991 AA 20992 || Sbjct 349262 AA 349263 >seq4 Length=425142 Score = 253 bits (280), Expect = 3e-63 Identities = 375/529 (71%), Gaps = 2/529 (0%) Strand=Plus/Plus Query 20453 TATGGGTAATATTGTAGATATTTCTAAATGGAATGGTGATATCAATTGGGACACAGCTAA 20512 |||||| |||||||||||||||| ||||||||||| ||| |||||||| | || Sbjct 333744 TATGGGGTATATTGTAGATATTTCAAAATGGAATGGAACTATTAATTGGGATATTGCAGC 333803 Query 20513 ACCTTATATTGATTTTATTATAGCTCGTGTTCAAGATGGTAGTAATTATCGTG-ATCCTC 20571 | || | | ||||| | || ||| | ||||||||||| |||| | ||| || | Sbjct 333804 ATCTCAGTTAGATTTAGTGATTGCTAGAGTTCAAGATGGCTCTAAT-ACGGTGGATTTTA 333862 Query 20572 GTTATAATGGTTACGTTGCTGATATGAAACGTAAAGGAATACCTTTTGGTAACTATGCTT 20631 ||| | ||| ||| ||| |||||| | | || || || ||||| ||||||| Sbjct 333863 TGTATCAAAATTATGTTAGTGAAATGAAAAAGCATAGTATCCCATTCGGTAATTATGCTT 333922 Query 20632 TTTGTAGATTCGTTTCTATTAATGATGCTAAGAAAGAAGCGCAAGATTTCTGGGATCGTG 20691 |||| | || | |||||| |||||| |||||||| || |||||||| ||| |||||| Sbjct 333923 TTTGCCGTTTTATATCTATTGCTGATGCAAAGAAAGAGGCACAAGATTTTTGGAATCGTG 333982 Query 20692 GAGATAAATCCTCTACCGTTTGGGTGGCAGATGTTGAAGTGAAAACGATGGATGATATGA 20751 | ||| |||| ||| ||||||| || || | ||||| ||||||||| |||||| Sbjct 333983 GTGATCAATCTGCTAAGTTTTGGGTAGCGGACATAGAAGTTCAAACGATGGTAGATATGC 334042 Query 20752 GAGCGGGAACGCAAGCTTTCATTGATGAATTACGTAGATTAGGTGCTAAGAAAGTTGGTT 20811 || || || || || || |||||||||||||| | ||||||| | ||||| || | Sbjct 334043 AAGGCGGGACACAGGCATTTATTGATGAATTACGCCGTTTAGGTGTGGAAAAAGTAGGAT 334102 Query 20812 TATATGTAGGTCATCATATGTATGAGTCTTTTGGTATGAGTCAAGTTCAATCTGACTTTG 20871 |||| ||||| ||||| | |||| || ||||| || | || || |||| || Sbjct 334103 TATACGTAGGACATCACACGTATTTATCATTTGGAGCATGTAATATTGAAGCTGATTTCA 334162 Query 20872 TATGGATTCCACGATATGGTGGTAGTAAACCTAAATATCCTTGTGATATTTGGCAATACA 20931 ||||||| || || ||||| || | ||| | |||||| || ||||| |||||||| | Sbjct 334163 TATGGATCCCTCGTTATGGAGGGAATAAGTCAGCATATCCATGCGATATGTGGCAATATA 334222 Query 20932 CTGAAACTGGTCACACACCGGGAATTGGTAAATGCGATTTGAATCAATT 20980 | || | || | || || ||||| ||||| ||| |||||| ||| Sbjct 334223 CGGATTCAGGGAATGTTCCTGGTATTGGGAAATGTGATCTGAATCGATT 334271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 77700707825405