Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_031034.1 Length=161140 Score E Sequences producing significant alignments: (Bits) Value seq6 132 5e-26 seq8 125 7e-24 seq16 122 9e-23 seq7 116 4e-21 seq361 82.4 8e-11 >seq6 Length=382643 Score = 132 bits (146), Expect = 5e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 47519 TTAACAGCAAATCCATCAGCTAAGATTATCGCAGTTGACCCACGAGTGATTCCATTAGGT 47578 |||||||| |||||| || | || |||||||| ||| | || |||||||||||| Sbjct 339031 TTAACAGCTAATCCAAACATGAAACTAATTGCAGTTGATCCAAGTGTCATTCCATTAGGT 339090 Query 47579 TCTAAGGTTCACGTAGAAGGTTACGGAACAGCAATTGCATCAGATACTGGTGGAGCTATT 47638 || || || || |||||||||||| |||||| || |||||||||||||||||| Sbjct 339091 TCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATCGCTGGTGATACTGGTGGAGCTATT 339150 Query 47639 AAAGGAAATCGTATCGACGTACTAATGCCTAACCAATCACAATCTAGCAACTGGGGCGTT 47698 ||||| ||| |||||||| ||||||| | || ||| || | |||||| | Sbjct 339151 AAAGGTAATAAAATCGACGTTTTAATGCCAGATAAAGGTTCATCAAGTAGCTGGGGACGT 339210 Query 47699 AAAACAGTAAAAGTTACAATCTTAAACTAGT 47729 |||||||| | ||||| | | |||||||||| Sbjct 339211 AAAACAGTTACAGTTAAAGTATTAAACTAGT 339241 >seq8 Length=318055 Score = 125 bits (138), Expect = 7e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 47434 AGTTAAAGCAACAGCTTACACTGCTGACCCATCCGAGAACGGAGGCACTTACGGTGGACG 47493 |||| ||| ||||| || || ||| |||| ||| ||||| ||||| || || || || Sbjct 28542 AGTTGTAGCTACAGCATATACAGCTCACCCGAGCGAAAACGGTGGCACATATGGCGGCCG 28483 Query 47494 AGTTCTAACAGCTACAGGATTCGATTTAACAGCAAATCCATCAGCTAAGATTATCGCAGT 47553 || |||| || | || |||||||| || |||||| || || ||||| || Sbjct 28482 TGTATTAACTGCAATGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGCTGT 28423 Query 47554 TGACCCACGAGTGATTCCATTAGGTTCTAAGGTTCACGTAGAAGGTTACGGAACAGCAAT 47613 |||||| ||| || |||||||| ||||| || ||||||||||||||| ||| || Sbjct 28422 TGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGCTAT 28363 Query 47614 TGCATCAGATACTGGTGGAGCTATTAAAGGAAATCGTATCGA 47655 || |||||||||||| || |||||||| || ||||| || Sbjct 28362 CGCTGGAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGA 28321 >seq16 Length=199848 Score = 122 bits (134), Expect = 9e-23 Identities = 224/320 (70%), Gaps = 15/320 (5%) Strand=Plus/Plus Query 47417 CAAGGT--AAAACAATCGTAGTTAA-AGCAACAGCTTACACTGCTGACCCATCCGAGAAC 47473 |||||| |||| ||| || ||| |||||| ||||| || ||||||||||| || ||| Sbjct 160169 CAAGGTGGAAAAGAATTTTACGTAACAGCAACCGCTTATACAGCTGACCCATCTGAAAAC 160228 Query 47474 GGAGGCACTTA--CGGTGGACGAGTTCTAACAGCTAC---AGGATTCGATTTAACAGCAA 47528 || | | | ||| || | | ||| | ||| |||| ||||||| |||| Sbjct 160229 GG---CTATAAACCGGGTGA--AACTGTAAAATCTAAGTTAGGACATAATTTAACTGCAA 160283 Query 47529 ATCCATCAGCTAAGATTA-TCGCAGTTGACCCACGAGTGATTCCATTAGGTTCTAAGGTT 47587 ||||| | | | |||| | || || || ||| || || ||||||||||||| || Sbjct 160284 ATCCAA-ACATGAAATTAATTGCTGTAGATCCATCTGTTATCCCATTAGGTTCTACTGTA 160342 Query 47588 CACGTAGAAGGTTACGGAACAGCAATTGCATCAGATACTGGTGGAGCTATTAAAGGAAAT 47647 | |||||||| || |||||||||||||| |||||||||| | || || ||||| || Sbjct 160343 TATGTAGAAGGATATGGAACAGCAATTGCTGGAGATACTGGTAGTGCAATAAAAGGGCAT 160402 Query 47648 CGTATCGACGTACTAATGCCTAACCAATCACAATCTAGCAACTGGGGCGTTAAAACAGTA 47707 || || || ||||||| || | | ||| ||| ||||||| | |||||| Sbjct 160403 ATCATTGATCTATTAATGCCAAATTCAGCTCAAGCTAATGACTGGGGTAGAAGAACAGTT 160462 Query 47708 AAAGTTACAATCTTAAACTA 47727 ||||||| ||| |||||||| Sbjct 160463 AAAGTTAAAATTTTAAACTA 160482 >seq7 Length=350003 Score = 116 bits (128), Expect = 4e-21 Identities = 164/227 (72%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 47440 AGCAACAGCTTACACTGCTGACCCATCCGAGAACGGAGGCACTTACGGTGGACGAGTTCT 47499 ||| ||||| || |||||||| ||| || || || || || |||||||| ||| | Sbjct 229000 AGCGACAGCGTATACTGCTGATCCAAGTGAAAATGGT---ACATATGGTGGACGCGTTTT 229056 Query 47500 AACAGCTACAGGATTCGATTTAACAGCAAATCCATCAGCTAAGA-TTATCGCAGTTGACC 47558 ||| || | || |||||||| |||||||| | | ||| ||||||||||||||| Sbjct 229057 AACTGCGATGGGGCATGATTTAACGGCAAATCCGA-ATATGAGAATTATCGCAGTTGACC 229115 Query 47559 CACGAGTGATTCCATTAGGTTCTAAGGTTCACGTAGAAGGTTACGGAACAGCAATTGCAT 47618 | ||| || |||||||| ||||| || |||||||| || ||| ||| || || Sbjct 229116 CGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAGAAGCGATCGCTG 229175 Query 47619 CAGATACTGGTGGAGCTATTAAAGGAAATCGTATCGACGTACTAATG 47665 |||||||| | || |||||||| |||||||| || || ||||| Sbjct 229176 GTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGTTTTAATG 229222 >seq361 Length=20807 Score = 82.4 bits (90), Expect = 8e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 47483 TACGGTGGACGAGTTCTAACAGCTACAGGATTCGATTTAACAGCAAATCCATCAGCTAAG 47542 || ||||| || || |||| || | || |||||||||||||||||| || Sbjct 1109 TATGGTGGTCGTGTATTAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAA 1168 Query 47543 ATTATCGCAGTTGACCCACGAGTGATTCCATTAGGTTCTAAGGTTCACGTAGAAGGTTAC 47602 | || || ||||| || ||| ||||| | || || || || |||||||| || Sbjct 1169 GTAATTGCTGTTGATCCGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATAT 1228 Query 47603 GGAACAGCAATTGCATCAGATACTGGTGGAGCTATTAAAGGAAATCGTATCGACGTACTA 47662 ||| ||| ||||| ||| || ||||| || ||||||||||||||||| || ||| || Sbjct 1229 GGAGAAGCGATTGCTGGAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGTATTA 1288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515484912420000